Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq466 277 2e-69
seq3289 109 5e-19
seq3603 98.7 8e-16
seq359 82.4 6e-11
>seq466
Length=100518
Score = 277 bits (306), Expect = 2e-69
Identities = 1026/1580 (65%), Gaps = 57/1580 (4%)
Strand=Plus/Minus
Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465
|| || || || ||||| || ||||| | || || || ||||| | |||||||||||||
Sbjct 43092 TTGTCTACAGTAAATTGTATAGCATTTGCAGCTGGTTTTGTGCGAAGATAATACATGCCT 43033
Query 130466 GTTTTGAGTCCAATTTTGTGTCCATAATTGTGGAT-GCTGCACATTGTTTGGTAATTGGG 130524
||||| || || ||| |||| |||||| | || ||| || || || ||
Sbjct 43032 GTTTTAAGGCCCGCTTTCCAGGAATAAAAGTGGATTGATGTTAATT-TTCCATAGTTTGG 42974
Query 130525 TTGCGCCAC--GAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCA 130582
| || || |||||| | | ||||| |||||||||||| || || || || ||
Sbjct 42973 CTCAGCAACATGAATAT--TAAAAGATTGACTTTGATCAATAAACGCCCCTCTATCAGCT 42916
Query 130583 GCCATGTCGAGCATGGTTTTATTTTTC---ATCTCCCAAGCGGTCTTGTATAGATCCCTA 130639
||||| | | | ||| ||| | |||||||| |||| ||||| | |||||
Sbjct 42915 GCCATTTTAA---TAGTTGACTTTACCGATATCTCCCATACGGTTTTGTACAAATCCCGG 42859
Query 130640 ATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTG 130699
|| | || |||||| | || ||| | || | | || ||||||| ||
Sbjct 42858 ATTTCTTCGGGTATAGATTCTATATTTTGTATAGATCCTCGGCTTGCGATAATTTGATTT 42799
Query 130700 CGCATACTTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATG 130759
||| | ||| |||| |||||| | ||| | |||||| ||| |
Sbjct 42798 TTCATCTCATCATCCCACAAATCAAGCTCCGTTAAATCACGCAATAAATGAGGATTTACA 42739
Query 130760 ATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAG 130819
| |||||| ||||| | || || ||||| |||||||| ||| | || || ||
Sbjct 42738 ACTTGAAACTCACCGGACAATACTCGTCTTGTATAAATGTTTGAAGTGTAGGGCTCGAAC 42679
Query 130820 GATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGA 130879
|| || |||||||| | |||||| || || | ||| ||||||||| || | || | |
Sbjct 42678 GACTCATTGTTGCCCATTATTTGCGCAGTGGATGCTGTGGGCATGGGAGCAATTAGCAAA 42619
Query 130880 GAATTACGAAGACCGTGCGTCGTGATTTTTCGC----TTCAATTCATCCCAATCCCATAG 130935
|| || | || ||||||| || ||| | | || | | |||||| ||||| ||
Sbjct 42618 GAGTTTCTAACACCGTGC----TGTTTTATGGACCTTTTAAGATGATCCCAGTCCCAAAG 42563
Query 130936 AGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACT 130995
| || ||| || | ||||||||||||| | |||| | || || || | |||||
Sbjct 42562 ATCTGTTGGT--GATCT-GTTCCACATATCATACTGTAAAACTCCCTTGCTTACTGGACT 42506
Query 130996 GGATTCGA---ACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAA 131052
| | | | | ||| || || || | || || |||||||||||
Sbjct 42505 ---TCCAATATAGGTTTCATACGGGCCATCCTTCTTGGACAATTCACAACTAGCTTCCAA 42449
Query 131053 AGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTC 131112
|||||| || ||||| ||||| ||||||| ||| || | |||| | ||| ||
Sbjct 42448 AGCTCCATAGTAAATAGTTTCAAAGATTTGTTGATTCAAAAGAGATGCTTCTTCGCTTTC 42389
Query 131113 GTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGG 131172
|| ||||| |||| | ||| || || ||||| | || |||| |||| || | ||
Sbjct 42388 ATACGGAAACCTCATCAGAATTAATGCATCTGCAAACCCTTGTACACCAATACCAATAGG 42329
Query 131173 TCTATGTTTTAAATTACATTTACGCGAACATTCGGT--GGGATAAAGGTTAATGTCAATT 131230
| || |||||| |||| | | | || ||||||| ||| || ||||||
Sbjct 42328 GCGGTGCCGTAAATTTGATTTTTTTG--CCTCTGGCAAGGGATAATAGTTTATATCAATT 42271
Query 131231 ATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAAC 131290
||||| || | || ||||||| || || ||||| ||| | ||| || |
Sbjct 42270 ATTTTATTCAGGTTTTTGGTAACAATTTTAGTTACATCTTTCAGTTTTTTGAAGTCGTAA 42211
Query 131291 GTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCC 131350
| ||||| | ||||| |||| |||||| || | |||||| || ||
Sbjct 42210 GATT---TTTCGGCCGTCACAAACATGTTTAGGGCTATTGATGCTAAATTACATACAGCT 42154
Query 131351 GTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTG 131410
||||||| | |||||| ||||||||| | ||| |||||||||| |||||| ||
Sbjct 42153 ATTTCGTCTGGCGCTGAATACTCAACAATTTCCGTGCATAAATTACTGCACTTTATAGTT 42094
Query 131411 CCCAAATTTTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGTACATCATGTAGGGCGT 131469
|| | |||||||||||||||||| | | ||| | ||| || | | |||||| || ||
Sbjct 42093 CCAACATTTTGTTGATTGCTTTT-TCTGTTACACGAGTCTTTAAAAAGCATGTAAGGGGT 42035
Query 131470 GCCCGTTTCGACTTGAGTTTCAATAATG--TATCGAAAGAGTTTTCGAGC--AGACAATT 131525
|| || || ||||||| |||||| ||| | | |||||| || |||| ||||||
Sbjct 42034 ACCAGTCTCCACTTGAGATTCAATTATGGCAAACCAAAGAGATT--GAGCCTTAACAATT 41977
Query 131526 -GATATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTT--GGC 131582
|| || | | | || |||||| || || | ||||| ||||||| | || |
Sbjct 41976 CGA---TTCTGTCGCCCCTCTTTTTCATATTTGACATACAATTTTTCAAATTCTTCACCC 41920
Query 131583 CAAACGAACTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCT 131642
||||| | || | || | ||| |||| | |||||||| | |||||| | ||||
Sbjct 41919 CAAAC-ATCT-TGCAGACCGGGGCATTTGTGTGGACACATCAACGACCAATCCTCGTTGG 41862
Query 131643 GTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTT 131702
|||||| ||||||||||| | ||| || | ||| || || || || ||||| | |||
Sbjct 41861 CTTCAACCCGCTTCATAAAGAGATCAGGAATCCACAAGGCATAAAATAGATCCCGAGCCC 41802
Query 131703 TTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCC 131762
| || ||| | || || ||||||| | | |||||| || || | ||| | |||||
Sbjct 41801 GATGTTCCTCTTTTCCAGTATTTTTTTTAAGGTCTAAAAATTCAAACACGTCTGAATGCC 41742
Query 131763 AGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGAC 131819
| || |||| || | || | ||| ||| | || ||| || |||| |||| |
Sbjct 41741 AAGGCTCCAGGTAAATAGCGAATGCTCCTGGTCTTTTACCACCACCCTGATCGACATAGC 41682
Query 131820 GAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGC 131879
| ||| ||||| |||| | | ||| || |||| || || | | ||||| ||||
Sbjct 41681 GTGCCACATTGTTAAATACTCTAAGCATTGGTACCAAGCCATTTGAAGTACCATTTGTGC 41622
Query 131880 TCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCG 131938
||| || |||| || |||| || ||||| || || ||||| ||||| ||||
Sbjct 41621 CGGAAATAGAGGTGCCCTTTGCTCGAATACAATGAACATTAAGACCAATGCCTCCTGCCG 41562
Query 131939 TATTTAGAGATTAGTGCGCA 131958
|||| ||||| | ||||||
Sbjct 41561 -ATTTGGAGATCATTGCGCA 41543
>seq3289
Length=20206255
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079
||| || |||| || | |||||||| || ||||| ||||| || |||||||||||
Sbjct 14369567 GCCACCACGCAGGCGGAGCACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGA 14369626
Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
| | |||| | ||||| | ||| || || ||| |||| | |||||| ||||| || ||
Sbjct 14369627 AAGGGTGCGACCATCTTCCAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGG 14369686
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| || ||||| || ||||||| ||| | | || | || || | | ||| ||
Sbjct 14369687 AATTCCTTCTTTGTCCTGGATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGAC 14369746
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| ||||| || | || ||||| || ||||| ||||| ||||||||
Sbjct 14369747 CTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTTACAAAAATTTGCAT 14369794
>seq3603
Length=2672878
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| || |||| |||| ||||| || || || || || |||||||| ||||||||
Sbjct 316357 CCACCACGCAGACGCAGCACCAAGTGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGAA 316298
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | |||| | || || ||||| || ||||| | || |||||||| ||||| || ||
Sbjct 316297 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGA 316238
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| ||| ||||| || ||| || || | | || | ||||| | || || ||
Sbjct 316237 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 316178
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| | || || | ||||| || || ||||||||||||||||||||
Sbjct 316177 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 316131
>seq359
Length=456481
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| || |||| || | ||||| || | || || || || || |||||||||||
Sbjct 66346 CCACCACGCAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAG 66287
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| |||| | ||||| || || || |||||| | || |||||||| || || || ||
Sbjct 66286 AGAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGG 66227
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| ||||| || || ||||||| || | | | || | || || | | || ||
Sbjct 66226 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACC 66167
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| ||||| || | || |||||||| || ||||| ||||| ||||||
Sbjct 66166 TCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCATA 66119
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424864329645360
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