Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq466 277 2e-69 seq3289 109 5e-19 seq3603 98.7 8e-16 seq359 82.4 6e-11 >seq466 Length=100518 Score = 277 bits (306), Expect = 2e-69 Identities = 1026/1580 (65%), Gaps = 57/1580 (4%) Strand=Plus/Minus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || || || || ||||| || ||||| | || || || ||||| | ||||||||||||| Sbjct 43092 TTGTCTACAGTAAATTGTATAGCATTTGCAGCTGGTTTTGTGCGAAGATAATACATGCCT 43033 Query 130466 GTTTTGAGTCCAATTTTGTGTCCATAATTGTGGAT-GCTGCACATTGTTTGGTAATTGGG 130524 ||||| || || ||| |||| |||||| | || ||| || || || || Sbjct 43032 GTTTTAAGGCCCGCTTTCCAGGAATAAAAGTGGATTGATGTTAATT-TTCCATAGTTTGG 42974 Query 130525 TTGCGCCAC--GAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCA 130582 | || || |||||| | | ||||| |||||||||||| || || || || || Sbjct 42973 CTCAGCAACATGAATAT--TAAAAGATTGACTTTGATCAATAAACGCCCCTCTATCAGCT 42916 Query 130583 GCCATGTCGAGCATGGTTTTATTTTTC---ATCTCCCAAGCGGTCTTGTATAGATCCCTA 130639 ||||| | | | ||| ||| | |||||||| |||| ||||| | ||||| Sbjct 42915 GCCATTTTAA---TAGTTGACTTTACCGATATCTCCCATACGGTTTTGTACAAATCCCGG 42859 Query 130640 ATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTG 130699 || | || |||||| | || ||| | || | | || ||||||| || Sbjct 42858 ATTTCTTCGGGTATAGATTCTATATTTTGTATAGATCCTCGGCTTGCGATAATTTGATTT 42799 Query 130700 CGCATACTTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATG 130759 ||| | ||| |||| |||||| | ||| | |||||| ||| | Sbjct 42798 TTCATCTCATCATCCCACAAATCAAGCTCCGTTAAATCACGCAATAAATGAGGATTTACA 42739 Query 130760 ATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAG 130819 | |||||| ||||| | || || ||||| |||||||| ||| | || || || Sbjct 42738 ACTTGAAACTCACCGGACAATACTCGTCTTGTATAAATGTTTGAAGTGTAGGGCTCGAAC 42679 Query 130820 GATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGA 130879 || || |||||||| | |||||| || || | ||| ||||||||| || | || | | Sbjct 42678 GACTCATTGTTGCCCATTATTTGCGCAGTGGATGCTGTGGGCATGGGAGCAATTAGCAAA 42619 Query 130880 GAATTACGAAGACCGTGCGTCGTGATTTTTCGC----TTCAATTCATCCCAATCCCATAG 130935 || || | || ||||||| || ||| | | || | | |||||| ||||| || Sbjct 42618 GAGTTTCTAACACCGTGC----TGTTTTATGGACCTTTTAAGATGATCCCAGTCCCAAAG 42563 Query 130936 AGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACT 130995 | || ||| || | ||||||||||||| | |||| | || || || | ||||| Sbjct 42562 ATCTGTTGGT--GATCT-GTTCCACATATCATACTGTAAAACTCCCTTGCTTACTGGACT 42506 Query 130996 GGATTCGA---ACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAA 131052 | | | | | ||| || || || | || || ||||||||||| Sbjct 42505 ---TCCAATATAGGTTTCATACGGGCCATCCTTCTTGGACAATTCACAACTAGCTTCCAA 42449 Query 131053 AGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTC 131112 |||||| || ||||| ||||| ||||||| ||| || | |||| | ||| || Sbjct 42448 AGCTCCATAGTAAATAGTTTCAAAGATTTGTTGATTCAAAAGAGATGCTTCTTCGCTTTC 42389 Query 131113 GTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGG 131172 || ||||| |||| | ||| || || ||||| | || |||| |||| || | || Sbjct 42388 ATACGGAAACCTCATCAGAATTAATGCATCTGCAAACCCTTGTACACCAATACCAATAGG 42329 Query 131173 TCTATGTTTTAAATTACATTTACGCGAACATTCGGT--GGGATAAAGGTTAATGTCAATT 131230 | || |||||| |||| | | | || ||||||| ||| || |||||| Sbjct 42328 GCGGTGCCGTAAATTTGATTTTTTTG--CCTCTGGCAAGGGATAATAGTTTATATCAATT 42271 Query 131231 ATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAAC 131290 ||||| || | || ||||||| || || ||||| ||| | ||| || | Sbjct 42270 ATTTTATTCAGGTTTTTGGTAACAATTTTAGTTACATCTTTCAGTTTTTTGAAGTCGTAA 42211 Query 131291 GTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCC 131350 | ||||| | ||||| |||| |||||| || | |||||| || || Sbjct 42210 GATT---TTTCGGCCGTCACAAACATGTTTAGGGCTATTGATGCTAAATTACATACAGCT 42154 Query 131351 GTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTG 131410 ||||||| | |||||| ||||||||| | ||| |||||||||| |||||| || Sbjct 42153 ATTTCGTCTGGCGCTGAATACTCAACAATTTCCGTGCATAAATTACTGCACTTTATAGTT 42094 Query 131411 CCCAAATTTTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGTACATCATGTAGGGCGT 131469 || | |||||||||||||||||| | | ||| | ||| || | | |||||| || || Sbjct 42093 CCAACATTTTGTTGATTGCTTTT-TCTGTTACACGAGTCTTTAAAAAGCATGTAAGGGGT 42035 Query 131470 GCCCGTTTCGACTTGAGTTTCAATAATG--TATCGAAAGAGTTTTCGAGC--AGACAATT 131525 || || || ||||||| |||||| ||| | | |||||| || |||| |||||| Sbjct 42034 ACCAGTCTCCACTTGAGATTCAATTATGGCAAACCAAAGAGATT--GAGCCTTAACAATT 41977 Query 131526 -GATATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTT--GGC 131582 || || | | | || |||||| || || | ||||| ||||||| | || | Sbjct 41976 CGA---TTCTGTCGCCCCTCTTTTTCATATTTGACATACAATTTTTCAAATTCTTCACCC 41920 Query 131583 CAAACGAACTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCT 131642 ||||| | || | || | ||| |||| | |||||||| | |||||| | |||| Sbjct 41919 CAAAC-ATCT-TGCAGACCGGGGCATTTGTGTGGACACATCAACGACCAATCCTCGTTGG 41862 Query 131643 GTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTT 131702 |||||| ||||||||||| | ||| || | ||| || || || || ||||| | ||| Sbjct 41861 CTTCAACCCGCTTCATAAAGAGATCAGGAATCCACAAGGCATAAAATAGATCCCGAGCCC 41802 Query 131703 TTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCC 131762 | || ||| | || || ||||||| | | |||||| || || | ||| | ||||| Sbjct 41801 GATGTTCCTCTTTTCCAGTATTTTTTTTAAGGTCTAAAAATTCAAACACGTCTGAATGCC 41742 Query 131763 AGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGAC 131819 | || |||| || | || | ||| ||| | || ||| || |||| |||| | Sbjct 41741 AAGGCTCCAGGTAAATAGCGAATGCTCCTGGTCTTTTACCACCACCCTGATCGACATAGC 41682 Query 131820 GAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGC 131879 | ||| ||||| |||| | | ||| || |||| || || | | ||||| |||| Sbjct 41681 GTGCCACATTGTTAAATACTCTAAGCATTGGTACCAAGCCATTTGAAGTACCATTTGTGC 41622 Query 131880 TCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCG 131938 ||| || |||| || |||| || ||||| || || ||||| ||||| |||| Sbjct 41621 CGGAAATAGAGGTGCCCTTTGCTCGAATACAATGAACATTAAGACCAATGCCTCCTGCCG 41562 Query 131939 TATTTAGAGATTAGTGCGCA 131958 |||| ||||| | |||||| Sbjct 41561 -ATTTGGAGATCATTGCGCA 41543 >seq3289 Length=20206255 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| || |||| || | |||||||| || ||||| ||||| || ||||||||||| Sbjct 14369567 GCCACCACGCAGGCGGAGCACCAAATGCAAAGTAGACTCTTTCTGGATATTGTAGTCAGA 14369626 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | |||| | ||||| | ||| || || ||| |||| | |||||| ||||| || || Sbjct 14369627 AAGGGTGCGACCATCTTCCAACTGCTTGCCAGCGAAAATTAAACGCTGCTGATCTGGAGG 14369686 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || ||||| || ||||||| ||| | | || | || || | | ||| || Sbjct 14369687 AATTCCTTCTTTGTCCTGGATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGAC 14369746 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | || ||||| || ||||| ||||| |||||||| Sbjct 14369747 CTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTTACAAAAATTTGCAT 14369794 >seq3603 Length=2672878 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| |||| ||||| || || || || || |||||||| |||||||| Sbjct 316357 CCACCACGCAGACGCAGCACCAAGTGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGAA 316298 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || ||||| || ||||| | || |||||||| ||||| || || Sbjct 316297 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGA 316238 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| ||||| || ||| || || | | || | ||||| | || || || Sbjct 316237 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 316178 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | ||||| || || |||||||||||||||||||| Sbjct 316177 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 316131 >seq359 Length=456481 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | ||||| || | || || || || || ||||||||||| Sbjct 66346 CCACCACGCAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAG 66287 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||| || || || |||||| | || |||||||| || || || || Sbjct 66286 AGAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGG 66227 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| || | | | || | || || | | || || Sbjct 66226 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACC 66167 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | || |||||||| || ||||| ||||| |||||| Sbjct 66166 TCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCATA 66119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424864329645360