Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq3134 116 1e-20 seq466 86.0 2e-11 >seq3134 Length=2474545 Score = 116 bits (128), Expect = 1e-20 Identities = 116/148 (78%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 443716 TCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGG 443775 |||| ||||||| || || || | || ||||||||||||||| || || ||||| ||| Sbjct 573757 TCGCATTTGCTGCTGTTGAGGGCATCTTCTTTAGCGGCAGCTTT-GCTTCTATCTTTTGG 573815 Query 443776 TTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGAC 443835 |||| |||||||| ||||||| ||| || || || |||||||||||| || ||| Sbjct 573816 CTGAAGAAGCGTGGCCTTATGCCCGGCCTCACTTTCTCGAACGAACTGATCTCCCGCGAC 573875 Query 443836 GAGGGTTTGCATTGCGACTTCGCCTGTC 443863 ||||| ||||||||||||| | ||||| Sbjct 573876 GAGGGACTGCATTGCGACTTTG-CTGTC 573902 >seq466 Length=100518 Score = 86.0 bits (94), Expect = 2e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 254979 TACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAAC 255038 |||||||| | | || || ||||| ||||| ||||| |||||||| || || || ||| Sbjct 41649 TACCAATGCTTAGAGTATTTAACAATGTGGCACGCTATGTCGATCAGGGTGGTGGTAAAA 41708 Query 255039 GCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCA 255075 | |||||||| ||| | || ||||||||||| ||||| Sbjct 41709 GACCAGGAGCATTCGCTATTTACCTGGAGCCTTGGCA 41745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588060656990850