Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq3169 138 4e-28 seq10088 120 1e-22 seq10967 102 3e-17 seq11667 95.1 4e-15 seq5511 91.5 5e-14 seq10543 82.4 3e-11 seq11373 80.6 1e-10 >seq3169 Length=10161210 Score = 138 bits (152), Expect = 4e-28 Identities = 132/168 (79%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 22113 GCCTTaaaaaaaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG 22172 |||| ||||||||| | |||| ||||| ||||| || |||| | ||||| ||| Sbjct 9823134 GCCTGAAAAAAATTTTACTCCGCTCTGCCCTTCATCCCAATACTATATTAATTAATTTTA 9823075 Query 22173 CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCAT 22232 ||| |||||| ||||||| || |||||||||||||||| |||| |||||||||||| | Sbjct 9823074 -ATTGTGCCGAGCTGGAAGCAATTACAAACGGCATGATGACCCTGCATCGCCAGCGGCGT 9823016 Query 22233 CAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGG 22280 | | |||||||||||| | |||||||| ||| || | ||||||| || Sbjct 9823015 GACCCCCTTGTCGCCTTACATATAATATATGCGCAAGATGAAAACAGG 9822968 >seq10088 Length=1173 Score = 120 bits (132), Expect = 1e-22 Identities = 90/106 (85%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 22783 ATTTTAGCTTCCTTAGCTCCTGAAAATCTCGATAACTCAAAAAATACGCCCGGTAGTGAT 22842 ||||||| |||||||||| ||| |||| ||||||||||| ||| ||||| ||||||||| Sbjct 828 ATTTTAGAGTCCTTAGCTCTTGAGAATCGCGATAACTCAAGAAAGACGCCGGGTAGTGAT 769 Query 22843 CTTATTTCATTATGGTGAAAGTTGGAACCTCTTACGTGCCGATCAA 22888 | ||||| | ||||||| |||||||||| | ||||||| |||||| Sbjct 768 CATATTTGAGTATGGTGGAAGTTGGAACGTGCTACGTGCGGATCAA 723 >seq10967 Length=1623 Score = 102 bits (112), Expect = 3e-17 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 22780 TCCATTTTAGCTTCCTTAGCTCCTGAAAATCTCGATAACTCAAAAAATACGCCCGGTAGT 22839 || ||| ||||||| | ||||| ||||||||| |||||||||| |||||||| | Sbjct 1604 TCGATTGTAGCTTCTTGAGCTCGTGAAAATCTTGATAACTCAAGTCTGACGCCCGGAGCT 1545 Query 22840 GATCTTATTTCATTATGGTGAAAGTTGGAACCTCTTACGTGCCGATCAA 22888 |||| |||||| |||| ||| || |||||||||| ||||||||||||| Sbjct 1544 GATCGTATTTCGTTATAGTGTGAGGTGGAACCTCTGACGTGCCGATCAA 1496 >seq11667 Length=1778 Score = 95.1 bits (104), Expect = 4e-15 Identities = 92/112 (82%), Gaps = 5/112 (4%) Strand=Plus/Plus Query 22782 CATTTTAGCTTCCTTAGCTC-CTGAAAATCTC-GATAACTCAAAAAATACGCCCGG-TAG 22838 ||| |||||||| | ||| |||||||| | ||||||| ||||||||||||||| ||| Sbjct 72 CATGTTAGCTTCGTCCACTCTCTGAAAATAACAGATAACTGAAAAAATACGCCCGGCTAG 131 Query 22839 TGATC-TTATTTCATTATGGTG-AAAGTTGGAACCTCTTACGTGCCGATCAA 22888 ||||| ||| ||| ||||||| ||||| | ||||||| |||||||||||| Sbjct 132 TGATCAGTATATCACTATGGTGCAAAGTGGCAACCTCTACCGTGCCGATCAA 183 >seq5511 Length=1278 Score = 91.5 bits (100), Expect = 5e-14 Identities = 77/92 (84%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 22802 CTGA-AAATCTCGATAACTCAAAAAATACGCCCGGTAGTGATCTTATTTCATTATGGTGA 22860 |||| |||||| || || ||| |||||| ||| |||||||||||| | |||||| ||||| Sbjct 1278 CTGACAAATCTAGAAAATTCAGAAAATAAGCCGGGTAGTGATCTTGTCTCATTACGGTGA 1219 Query 22861 AAGTTGGAACCTCTTACGTGCCGATCAACGTC 22892 |||||| |||| |||||||| |||| ||||| Sbjct 1218 TAGTTGGTACCTATTACGTGCTGATC-ACGTC 1188 >seq10543 Length=609 Score = 82.4 bits (90), Expect = 3e-11 Identities = 85/105 (81%), Gaps = 5/105 (5%) Strand=Plus/Plus Query 22782 CATTTTAGCTTCCTTAGCTCCTGAAAATCTCGATAACTCAAAAAATACGCCC-GGTAGTG 22840 |||||||||||||| || ||||| ||||| ||||| |||||||| ||||| ||||| Sbjct 105 CATTTTAGCTTCCTGAG-TCCTGCAAATCCTGATAAACCAAAAAATTCGCCCGGGTAGGA 163 Query 22841 ATCTTATTTCATTATGG-TGAAAGTTGGAACCTCTTACGTGCCGA 22884 || ||||||| |||||| ||||||||| |||| || || |||| Sbjct 164 ATTTTATTTC-TTATGGCCGAAAGTTGG-ACCTTATAAGTTCCGA 206 >seq11373 Length=1956 Score = 80.6 bits (88), Expect = 1e-10 Identities = 93/111 (84%), Gaps = 11/111 (10%) Strand=Plus/Minus Query 22113 GCCTTaaaaaaaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG 22172 ||||||||| | |||||| | ||||||| |||||||||| ||||||||| ||||||| || Sbjct 104 GCCTTAAAACA-TTACGCACAGCCCTGC-ACTCATCGCACTACTGTTGT-ATTCATT-AG 49 Query 22173 CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGC 22223 ||||||||| || | | ||||| ||| ||||||| | || ||||| ||||| Sbjct 48 CATTCTGCC-ACCT-GCAGCCA-CAC-AACGGCA-GCTG-ACCTG-ATCGC 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184415165484540