Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_027984.1
Length=57677
Score E
Sequences producing significant alignments: (Bits) Value
seq3169 138 4e-28
seq10088 120 1e-22
seq10967 102 3e-17
seq11667 95.1 4e-15
seq5511 91.5 5e-14
seq10543 82.4 3e-11
seq11373 80.6 1e-10
>seq3169
Length=10161210
Score = 138 bits (152), Expect = 4e-28
Identities = 132/168 (79%), Gaps = 1/168 (1%)
Strand=Plus/Minus
Query 22113 GCCTTaaaaaaaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG 22172
|||| ||||||||| | |||| ||||| ||||| || |||| | ||||| |||
Sbjct 9823134 GCCTGAAAAAAATTTTACTCCGCTCTGCCCTTCATCCCAATACTATATTAATTAATTTTA 9823075
Query 22173 CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCAT 22232
||| |||||| ||||||| || |||||||||||||||| |||| |||||||||||| |
Sbjct 9823074 -ATTGTGCCGAGCTGGAAGCAATTACAAACGGCATGATGACCCTGCATCGCCAGCGGCGT 9823016
Query 22233 CAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGG 22280
| | |||||||||||| | |||||||| ||| || | ||||||| ||
Sbjct 9823015 GACCCCCTTGTCGCCTTACATATAATATATGCGCAAGATGAAAACAGG 9822968
>seq10088
Length=1173
Score = 120 bits (132), Expect = 1e-22
Identities = 90/106 (85%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 22783 ATTTTAGCTTCCTTAGCTCCTGAAAATCTCGATAACTCAAAAAATACGCCCGGTAGTGAT 22842
||||||| |||||||||| ||| |||| ||||||||||| ||| ||||| |||||||||
Sbjct 828 ATTTTAGAGTCCTTAGCTCTTGAGAATCGCGATAACTCAAGAAAGACGCCGGGTAGTGAT 769
Query 22843 CTTATTTCATTATGGTGAAAGTTGGAACCTCTTACGTGCCGATCAA 22888
| ||||| | ||||||| |||||||||| | ||||||| ||||||
Sbjct 768 CATATTTGAGTATGGTGGAAGTTGGAACGTGCTACGTGCGGATCAA 723
>seq10967
Length=1623
Score = 102 bits (112), Expect = 3e-17
Identities = 88/109 (81%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 22780 TCCATTTTAGCTTCCTTAGCTCCTGAAAATCTCGATAACTCAAAAAATACGCCCGGTAGT 22839
|| ||| ||||||| | ||||| ||||||||| |||||||||| |||||||| |
Sbjct 1604 TCGATTGTAGCTTCTTGAGCTCGTGAAAATCTTGATAACTCAAGTCTGACGCCCGGAGCT 1545
Query 22840 GATCTTATTTCATTATGGTGAAAGTTGGAACCTCTTACGTGCCGATCAA 22888
|||| |||||| |||| ||| || |||||||||| |||||||||||||
Sbjct 1544 GATCGTATTTCGTTATAGTGTGAGGTGGAACCTCTGACGTGCCGATCAA 1496
>seq11667
Length=1778
Score = 95.1 bits (104), Expect = 4e-15
Identities = 92/112 (82%), Gaps = 5/112 (4%)
Strand=Plus/Plus
Query 22782 CATTTTAGCTTCCTTAGCTC-CTGAAAATCTC-GATAACTCAAAAAATACGCCCGG-TAG 22838
||| |||||||| | ||| |||||||| | ||||||| ||||||||||||||| |||
Sbjct 72 CATGTTAGCTTCGTCCACTCTCTGAAAATAACAGATAACTGAAAAAATACGCCCGGCTAG 131
Query 22839 TGATC-TTATTTCATTATGGTG-AAAGTTGGAACCTCTTACGTGCCGATCAA 22888
||||| ||| ||| ||||||| ||||| | ||||||| ||||||||||||
Sbjct 132 TGATCAGTATATCACTATGGTGCAAAGTGGCAACCTCTACCGTGCCGATCAA 183
>seq5511
Length=1278
Score = 91.5 bits (100), Expect = 5e-14
Identities = 77/92 (84%), Gaps = 2/92 (2%)
Strand=Plus/Minus
Query 22802 CTGA-AAATCTCGATAACTCAAAAAATACGCCCGGTAGTGATCTTATTTCATTATGGTGA 22860
|||| |||||| || || ||| |||||| ||| |||||||||||| | |||||| |||||
Sbjct 1278 CTGACAAATCTAGAAAATTCAGAAAATAAGCCGGGTAGTGATCTTGTCTCATTACGGTGA 1219
Query 22861 AAGTTGGAACCTCTTACGTGCCGATCAACGTC 22892
|||||| |||| |||||||| |||| |||||
Sbjct 1218 TAGTTGGTACCTATTACGTGCTGATC-ACGTC 1188
>seq10543
Length=609
Score = 82.4 bits (90), Expect = 3e-11
Identities = 85/105 (81%), Gaps = 5/105 (5%)
Strand=Plus/Plus
Query 22782 CATTTTAGCTTCCTTAGCTCCTGAAAATCTCGATAACTCAAAAAATACGCCC-GGTAGTG 22840
|||||||||||||| || ||||| ||||| ||||| |||||||| ||||| |||||
Sbjct 105 CATTTTAGCTTCCTGAG-TCCTGCAAATCCTGATAAACCAAAAAATTCGCCCGGGTAGGA 163
Query 22841 ATCTTATTTCATTATGG-TGAAAGTTGGAACCTCTTACGTGCCGA 22884
|| ||||||| |||||| ||||||||| |||| || || ||||
Sbjct 164 ATTTTATTTC-TTATGGCCGAAAGTTGG-ACCTTATAAGTTCCGA 206
>seq11373
Length=1956
Score = 80.6 bits (88), Expect = 1e-10
Identities = 93/111 (84%), Gaps = 11/111 (10%)
Strand=Plus/Minus
Query 22113 GCCTTaaaaaaaTTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG 22172
||||||||| | |||||| | ||||||| |||||||||| ||||||||| ||||||| ||
Sbjct 104 GCCTTAAAACA-TTACGCACAGCCCTGC-ACTCATCGCACTACTGTTGT-ATTCATT-AG 49
Query 22173 CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGC 22223
||||||||| || | | ||||| ||| ||||||| | || ||||| |||||
Sbjct 48 CATTCTGCC-ACCT-GCAGCCA-CAC-AACGGCA-GCTG-ACCTG-ATCGC 5
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 184415165484540
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |