Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3023 123 3e-23 >seq3023 Length=5802038 Score = 123 bits (136), Expect = 3e-23 Identities = 290/427 (68%), Gaps = 12/427 (3%) Strand=Plus/Plus Query 178883 AACCCGTGCCGATGCCTTCGGTTCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 178942 |||| ||||||||||| |||| || ||||| || ||||| || | | || ||||| Sbjct 628861 AACCAGTGCCGATGCCCTCGGCGCCATTCACCAGTACCATCGGTATAATGGGAATATACC 628920 Query 178943 AGTCTGGTTCAATCGCAC-GCCCGTCATCATCCAAATAATTGAGCACGGGGTCGTCCCTC 179001 | ||| ||||| || | | || ||||| || ||| | |||| ||| || ||| | Sbjct 628921 AAATTGGCTCAAT-GCGCTGACCATCATCGACCTGATACTGCAGCAGGGGATCATCCAAC 628979 Query 179002 GGATCAAAGATTTTACGAGCATCCCTGGTGAGTTT--TGTGAAGATGTACCT--CGTTTG 179057 |||| | |||| ||| | | || || | |||||| || || | || | | Sbjct 628980 GGATGATAGATGAGACGTGTTAGC--GGCGACATCAATGTGAAAATATAACGAGCGCTCG 629037 Query 179058 AGACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATT 179117 || ||| |||||||| ||||||| || || || ||||| | ||||| | | ||| Sbjct 629038 C-ACA-ATCCTTGCCACCAGTGAGACGTGTACCGAACTGACCGCGCGGCTCCAACAAATT 629095 Query 179118 GATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGA 179176 |||||||||||| |||| | | | ||||| || ||||| || ||| || ||||| | Sbjct 629096 GATATTGTTTGAGCCCACAAAATTCTGTGCCAAATTCACAATGGTCATCTGC-AGGGACA 629154 Query 179177 CTTCACCGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCA 179236 || |||||||| || || ||| | || ||||| | ||| ||| || ||||| |||| Sbjct 629155 TCTCGCCGTGATGATAGGCTGACATTTCAGCCACCGAACCCGACAATTGGGCCACTTTCA 629214 Query 179237 TCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATCACCTTTCTTTGTGAAGGCTTGA 179296 |||| ||| ||| | |||||||| | |||| ||||| | || ||||| | Sbjct 629215 CCTCACGCTTATCGTTACGCTTGAAGCACGTAAACATGACCTTGCGCTGACCGGGCTTAA 629274 Query 179297 GGCCGTC 179303 |||| || Sbjct 629275 GGCCATC 629281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618330607146800