Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq466 141 1e-28
seq3023 104 3e-17
seq3134 98.7 1e-15
>seq466
Length=100518
Score = 141 bits (156), Expect = 1e-28
Identities = 461/701 (66%), Gaps = 19/701 (3%)
Strand=Plus/Plus
Query 104906 TCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 104965
|||||| ||||||||||| || |||||||||| |||||| | |||||| ||| ||
Sbjct 42017 TCTCAAGTGGAGACTGGTACCCCTTACATGCTTTTTAAAGACTCGTGTAACAGAAAAAGC 42076
Query 104966 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTT 105025
|||||| | ||| | || || ||| | ||| | || || ||||| | || | |
Sbjct 42077 AATCAACAAAATGTTGGAACTATAAAGTGCAGTAATTTATGCACGGAAATTGTTGAGTAT 42136
Query 105026 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 105085
||| ||| || | ||||| ||||| | |||||||| || || || || ||||
Sbjct 42137 TCAGCGCCAGACGAAATAGCTGTATGTAATTTAGCATCAATAGCCCTAAACATGTTTGTG 42196
Query 105086 GATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACC 105145
| || ||| | | || | ||||||| | || || || |||| ||| |||
Sbjct 42197 ACGGCCGA---AAAATCTTACGACTTCAAAAAACTGAAAGATGTAACTAAAATTGTTACC 42253
Query 105146 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTG--AGACTGCTCGTAAAT 105203
|||||||| || | | | ||||||| ||| | ||| ||| ||| ||| || ||||
Sbjct 42254 AAAAACCTGAATAAAATAATTGATATAAACTATTATCCC-TTGCCAGA-GGCAAAAAAAT 42311
Query 105204 CTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTC 105263
| ||| | | ||||| || |||||| | ||||| || || | || |||| ||| ||||
Sbjct 42312 CAAATTTACGGCACCGCCCTATTGGTATTGGTGTACAAGGGTTTGCAGATGCATTAATTC 42371
Query 105264 T-TTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAG 105322
| || | | | | ||| ||| ||||| | ||| | || |||||
Sbjct 42372 TGATGAGGTTTC-CGTATGAAAGCGAAGAAGCATCTCTTTTGAATCAACAAATCTTTGAA 42430
Query 105323 ACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATAT 105382
|| || || | | ||| | || || |||| || ||| | || ||||| || |||
Sbjct 42431 ACTATTTACTATGGAGCTTTGGAAGCTAGTTGTGAATTGTCCAAGAAGGATGGCCCGTAT 42490
Query 105383 GAAACCTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGA-AG 105440
||||||| | || ||||| | |||||| || | || | |||||||||| | ||
Sbjct 42491 GAAACCTATATTGGAAGTCCAG-TAAGCAAGGGAGTTTTACAGTATGATATGTGGAACAG 42549
Query 105441 GTGAGACCAA-GCTTCACTACGACTGGGAAGCTCTCAAGGAACG--CATCAAGGAGAAGG 105497
| ||||| || | |||||||| ||| || || | ||| || || | |
Sbjct 42550 AT--CACCAACAGATCTTTGGGACTGGGATCATCTTAA--AAGGTCCATAAAACAGCACG 42605
Query 105498 GTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGG 105557
|| || | ||| | | || || ||||| ||||| ||||| ||||| || ||||| |||
Sbjct 42606 GTGTTAGAAACTCTTTGCTAATTGCTCCCATGCCCACAGCATCCACTGCGCAAATAATGG 42665
Query 105558 GTAATAATGAATGCTTTGAACCCTACACGACGAACATCTAT 105598
| || ||||| | || || |||||||| | ||||| |||
Sbjct 42666 GCAACAATGAGTCGTTCGAGCCCTACACTTCAAACATTTAT 42706
>seq3023
Length=5802038
Score = 104 bits (114), Expect = 3e-17
Identities = 172/246 (70%), Gaps = 2/246 (1%)
Strand=Plus/Plus
Query 168457 ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATT 168516
|||||| ||||| ||||||| ||||| |||||||| | |||||| | | |||||||||
Sbjct 629042 ATCCTTGCCACCAGTGAGACGTGTACCGAACTGACCGCGCGGCTCCAACAAATTGATATT 629101
Query 168517 GTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGT-GTCCGCGAGAGAGACTTCAC 168575
|||||| |||| | | | ||||| || ||||| || || || || || | || |
Sbjct 629102 GTTTGAGCCCACAAAATTCTGTGCCAAATTCACAATGGTCATCTGC-AGGGACATCTCGC 629160
Query 168576 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCAT 168635
|||| || || || | | || || || | ||| ||| || |||||||||| ||||
Sbjct 629161 CGTGATGATAGGCTGACATTTCAGCCACCGAACCCGACAATTGGGCCACTTTCACCTCAC 629220
Query 168636 CCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCAT 168695
||| || | |||||| | |||| |||||||| || ||||| || ||||
Sbjct 629221 GCTTATCGTTACGCTTGAAGCACGTAAACATGACCTTGCGCTGACCGGGCTTAAGGCCAT 629280
Query 168696 CCGCCA 168701
|| |||
Sbjct 629281 CCACCA 629286
>seq3134
Length=2474545
Score = 98.7 bits (108), Expect = 1e-15
Identities = 112/148 (76%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856
||||| ||||| || |||||||||| ||||||||| |||||||| || |||
Sbjct 573740 CTTTGGGGAGCGCATCATCGCATTTGCTGCTGTTGAGGGCATCTTCTTTAGCGGCAGCTT 573799
Query 94857 CTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915
||| |||| | |||||| |||||||| || || ||||| || ||| ||||| ||||
Sbjct 573800 -TGCTTCTATCTTTTGGCTGAAGAAGCGTGGCCTTATGCCCGGCCTCACTTTCTCGAACG 573858
Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCA 94943
| || ||||| || ||||||||||| ||
Sbjct 573859 AACTGATCTCCCGCGACGAGGGACTGCA 573886
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583162156017200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |