Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq466 141 1e-28 seq3023 104 3e-17 seq3134 98.7 1e-15 >seq466 Length=100518 Score = 141 bits (156), Expect = 1e-28 Identities = 461/701 (66%), Gaps = 19/701 (3%) Strand=Plus/Plus Query 104906 TCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 104965 |||||| ||||||||||| || |||||||||| |||||| | |||||| ||| || Sbjct 42017 TCTCAAGTGGAGACTGGTACCCCTTACATGCTTTTTAAAGACTCGTGTAACAGAAAAAGC 42076 Query 104966 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTT 105025 |||||| | ||| | || || ||| | ||| | || || ||||| | || | | Sbjct 42077 AATCAACAAAATGTTGGAACTATAAAGTGCAGTAATTTATGCACGGAAATTGTTGAGTAT 42136 Query 105026 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 105085 ||| ||| || | ||||| ||||| | |||||||| || || || || |||| Sbjct 42137 TCAGCGCCAGACGAAATAGCTGTATGTAATTTAGCATCAATAGCCCTAAACATGTTTGTG 42196 Query 105086 GATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACC 105145 | || ||| | | || | ||||||| | || || || |||| ||| ||| Sbjct 42197 ACGGCCGA---AAAATCTTACGACTTCAAAAAACTGAAAGATGTAACTAAAATTGTTACC 42253 Query 105146 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTG--AGACTGCTCGTAAAT 105203 |||||||| || | | | ||||||| ||| | ||| ||| ||| ||| || |||| Sbjct 42254 AAAAACCTGAATAAAATAATTGATATAAACTATTATCCC-TTGCCAGA-GGCAAAAAAAT 42311 Query 105204 CTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTC 105263 | ||| | | ||||| || |||||| | ||||| || || | || |||| ||| |||| Sbjct 42312 CAAATTTACGGCACCGCCCTATTGGTATTGGTGTACAAGGGTTTGCAGATGCATTAATTC 42371 Query 105264 T-TTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAG 105322 | || | | | | ||| ||| ||||| | ||| | || ||||| Sbjct 42372 TGATGAGGTTTC-CGTATGAAAGCGAAGAAGCATCTCTTTTGAATCAACAAATCTTTGAA 42430 Query 105323 ACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATAT 105382 || || || | | ||| | || || |||| || ||| | || ||||| || ||| Sbjct 42431 ACTATTTACTATGGAGCTTTGGAAGCTAGTTGTGAATTGTCCAAGAAGGATGGCCCGTAT 42490 Query 105383 GAAACCTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGA-AG 105440 ||||||| | || ||||| | |||||| || | || | |||||||||| | || Sbjct 42491 GAAACCTATATTGGAAGTCCAG-TAAGCAAGGGAGTTTTACAGTATGATATGTGGAACAG 42549 Query 105441 GTGAGACCAA-GCTTCACTACGACTGGGAAGCTCTCAAGGAACG--CATCAAGGAGAAGG 105497 | ||||| || | |||||||| ||| || || | ||| || || | | Sbjct 42550 AT--CACCAACAGATCTTTGGGACTGGGATCATCTTAA--AAGGTCCATAAAACAGCACG 42605 Query 105498 GTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGG 105557 || || | ||| | | || || ||||| ||||| ||||| ||||| || ||||| ||| Sbjct 42606 GTGTTAGAAACTCTTTGCTAATTGCTCCCATGCCCACAGCATCCACTGCGCAAATAATGG 42665 Query 105558 GTAATAATGAATGCTTTGAACCCTACACGACGAACATCTAT 105598 | || ||||| | || || |||||||| | ||||| ||| Sbjct 42666 GCAACAATGAGTCGTTCGAGCCCTACACTTCAAACATTTAT 42706 >seq3023 Length=5802038 Score = 104 bits (114), Expect = 3e-17 Identities = 172/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 168457 ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATT 168516 |||||| ||||| ||||||| ||||| |||||||| | |||||| | | ||||||||| Sbjct 629042 ATCCTTGCCACCAGTGAGACGTGTACCGAACTGACCGCGCGGCTCCAACAAATTGATATT 629101 Query 168517 GTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGT-GTCCGCGAGAGAGACTTCAC 168575 |||||| |||| | | | ||||| || ||||| || || || || || | || | Sbjct 629102 GTTTGAGCCCACAAAATTCTGTGCCAAATTCACAATGGTCATCTGC-AGGGACATCTCGC 629160 Query 168576 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCAT 168635 |||| || || || | | || || || | ||| ||| || |||||||||| |||| Sbjct 629161 CGTGATGATAGGCTGACATTTCAGCCACCGAACCCGACAATTGGGCCACTTTCACCTCAC 629220 Query 168636 CCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCAT 168695 ||| || | |||||| | |||| |||||||| || ||||| || |||| Sbjct 629221 GCTTATCGTTACGCTTGAAGCACGTAAACATGACCTTGCGCTGACCGGGCTTAAGGCCAT 629280 Query 168696 CCGCCA 168701 || ||| Sbjct 629281 CCACCA 629286 >seq3134 Length=2474545 Score = 98.7 bits (108), Expect = 1e-15 Identities = 112/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||||| ||||| || |||||||||| ||||||||| |||||||| || ||| Sbjct 573740 CTTTGGGGAGCGCATCATCGCATTTGCTGCTGTTGAGGGCATCTTCTTTAGCGGCAGCTT 573799 Query 94857 CTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 ||| |||| | |||||| |||||||| || || ||||| || ||| ||||| |||| Sbjct 573800 -TGCTTCTATCTTTTGGCTGAAGAAGCGTGGCCTTATGCCCGGCCTCACTTTCTCGAACG 573858 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCA 94943 | || ||||| || ||||||||||| || Sbjct 573859 AACTGATCTCCCGCGACGAGGGACTGCA 573886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583162156017200