Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq3023 149 7e-31
seq3134 98.7 1e-15
seq3289 86.0 7e-12
>seq3023
Length=5802038
Score = 149 bits (164), Expect = 7e-31
Identities = 213/300 (71%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||| ||||||| ||| ||| |||||||||||||| ||||| |||||||| ||
Sbjct 629016 GTGAAAATATAACGAGCGCTCGCACAATCCTTGCCACCAGTGAGACGTGTACCGAACTGA 629075
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|| | ||||||||| | || | ||||| | ||||||||| || || ||||| || |||
Sbjct 629076 CCGCGCGGCTCCAACAAATTGATATTGTTTGAGCCCACAAAATTCTGTGCCAAATTCACA 629135
Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484
|| || || ||| | ||| || || ||||| || | | || ||||| | |||
Sbjct 629136 ATGGTCATCTGCAGGGACATCTCGCCGTGATGATAGGCTGACATTTCAGCCACCGAACCC 629195
Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544
| || || ||||| |||| || | | ||| ||||| ||| | | | || |||
Sbjct 629196 GACAATTGGGCCACTTTCACCTCACGCTTATCGTTACGCTTGAAGCACGTAAACATGACC 629255
Query 117545 TTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTCCTCA 117604
|||||||||| ||||| || |||||| ||| || || ||||| | | ||||| ||
Sbjct 629256 TTGCGCTGACCGGGCTTAAGGCCATCCACCAGACTGGGTATGGAACGTTCGTTGTCCGCA 629315
Score = 93.3 bits (102), Expect = 5e-14
Identities = 299/457 (65%), Gaps = 14/457 (3%)
Strand=Plus/Plus
Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTA--AA 151933
|| || ||||||||||| || || || ||||| | |||||| | ||| || || ||
Sbjct 628863 CCAGTGCCGATGCCCTCGGCGCCATTCACCAGTACCATCGGTATAATGGGAATATACCAA 628922
Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993
| | ||||| | | ||||| ||||| | | || | || | || || || ||
Sbjct 628923 ATT--GGCTCAATGCGCTGACCATCATCGACCTGATACTGCAGCAGGGGATCATCCAACG 628980
Query 151994 GATCGAATATCCGTCGAGTCATAGG--AC-TCAAACGCGTGAAGATGTATCGGGAGCTGG 152050
||| | || | || || | || || |||| ||||| || || || | ||| |
Sbjct 628981 GATGATAGATGAGACGTGTTAGCGGCGACATCAAT---GTGAAAATATAACGAGCGCTCG 629037
Query 152051 CCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGA 152110
| |||||||||||| | || || || || ||||| || ||||| | | ||||
Sbjct 629038 CACAATCCTTGCCACCAGTGAGACGTGTACCGAACTGACCGCGCGGCTCCAACAAATTGA 629097
Query 152111 GGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTT 152170
||||| | |||||| |||||||| |||||||||||||| || |||||| | |
Sbjct 629098 TATTGTTTGAGCCCACAAAATTCTGTGCCAAATTCACAATGGTCATCTGCAGGGACATCT 629157
Query 152171 CACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGT 152230
| ||||| ||||| || | | || || | | |||| ||| || ||||| |||| |
Sbjct 629158 CGCCGTGATGATAGGCTGACATTTCAGCCACCGAACCCGACAATTGGGCCACTTTCACCT 629217
Query 152231 CCGTCGTCAGGTTCTTCTTGAGACAGGCGTAA--ATCACCTTGCGCTGGGATGGTTTCAA 152288
| | | ||| ||||| || ||||| || ||||||||||| || || |
Sbjct 629218 CACGCTTATCGTTACGCTTGAAGCA--CGTAAACATGACCTTGCGCTGACCGGGCTTAAG 629275
Query 152289 ACCGTCCACCACGTGAGGAATCGAACGCTTGATGTCC 152325
|| ||||||| || || ||||| | | |||||
Sbjct 629276 GCCATCCACCAGACTGGGTATGGAACGTTCGTTGTCC 629312
>seq3134
Length=2474545
Score = 98.7 bits (108), Expect = 1e-15
Identities = 313/485 (65%), Gaps = 3/485 (1%)
Strand=Plus/Minus
Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843
|||| ||| ||||| || | ||||| |||||||| ||||||||||||| |||||||||
Sbjct 573865 ATCAGTTCGTTCGAGAAAGTGAGGCCGGGCATAAGGCCACGCTTCTTCAGCCAAAAGATA 573806
Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903
| | ||| || || ||||||||||| || ||| ||||| |||| | ||| | |
Sbjct 573805 GAAGCAAAGCTGCCGCTAAAGAAGATGCCCTCAACAGCAGCAAATGCGATGATGCGCTCC 573746
Query 74904 GCGAA---CGGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACC 74960
| || | ||| | || | ||||||| | ||||| || || || || || ||
Sbjct 573745 CCAAAGTTAGCTGCCTTAGAGGATATCCAAGAAAGCGCCCAGTCGGCCTTCCGCTTAACT 573686
Query 74961 GCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGC 75020
|| || | || || || || | || || | || | ||||| |
Sbjct 573685 GCCGGCATTGTTTCAATTGCATTAAATAGATAATCACGCTGATGCGGATCGCGTATATAT 573626
Query 75021 TTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCG 75080
||||||||| | |||| | ||||| || | ||| || ||| | |
Sbjct 573625 GTGTCAATCAGGACGCTGTACATTTCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCA 573566
Query 75081 TAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCC 75140
||||| | || ||||||| |||||| || |||| |||| | | | | ||||||
Sbjct 573565 TAGAAGCAACGAGCCTCTGTAATCTGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCG 573506
Query 75141 ATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCA 75200
| || ||||| || |||||||| ||||| ||||| || | || || || |||||
Sbjct 573505 TTAACAATGCCATCGGAGGCGGCAAAAAAGGCCAGAACATGTGAAATGAAATGACGCTCG 573446
Query 75201 TCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTC 75260
| ||| || || |||| || |||| ||| | || ||| | ||||| || |||
Sbjct 573445 TTGTCTGTTAGGCGTGCCCAGTCAGTCAGATCCTTAGACAGATCCACTTCCTCCACAGTC 573386
Query 75261 CAGAA 75265
|||||
Sbjct 573385 CAGAA 573381
>seq3289
Length=20206255
Score = 86.0 bits (94), Expect = 7e-12
Identities = 200/292 (68%), Gaps = 21/292 (7%)
Strand=Plus/Plus
Query 158939 CAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGG---AC 158995
||| ||| || || | ||||||||||| ||||| ||||| ||||| || |||| |
Sbjct 9624375 CAACAAATTCACGCACACTGTGCGTCTCGCCAGTGGCAATTACAAAATCGGCTGGCGCAT 9624434
Query 158996 CGGGCTGTTGGAGCATGAGCCACATGGCCTCGACGTAATC-CTGCGCGTGACCCCAGTCG 159054
|| || || ||||| | |||||||||||| || || || ||| || |||||||||||
Sbjct 9624435 CGCGC---TGCAGCATCATCCACATGGCCTCCACATAGTCGCTG-GCATGACCCCAGTCA 9624490
Query 159055 CGCTTGGCATCCATGTTCCCGAGCTCGATGACTTTTCCA---GACTTTTTCCA---CTCA 159108
|| || | |||| || || ||||| | | | ||||| || || | | ||
Sbjct 9624491 CGTTTCGAGTCCAGATTACCCAGCTCAA--AGTATTCCATTTGA-TTGAGCAATATCTTT 9624547
Query 159109 GC--CAGACCGAGCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCAT 159166
|| |||| | |||| || || || |||||||| | | || |||||| |||||
Sbjct 9624548 GCAACAGATC--GCGTTATTTTACGTGTCACAAAATTCTCACCACGCCGTGGACTCTCAT 9624605
Query 159167 GGTTAAACAGAATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATT 159218
| || || || || || |||| || |||| || |||| ||| | |||||
Sbjct 9624606 GATTGAAGAGTATACCATTACAGGCAAACATGTCGTAGGCCTCCCTATAATT 9624657
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547123452094000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |