Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3023 149 7e-31 seq3134 98.7 1e-15 seq3289 86.0 7e-12 >seq3023 Length=5802038 Score = 149 bits (164), Expect = 7e-31 Identities = 213/300 (71%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| ||| ||| |||||||||||||| ||||| |||||||| || Sbjct 629016 GTGAAAATATAACGAGCGCTCGCACAATCCTTGCCACCAGTGAGACGTGTACCGAACTGA 629075 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | ||||||||| | || | ||||| | ||||||||| || || ||||| || ||| Sbjct 629076 CCGCGCGGCTCCAACAAATTGATATTGTTTGAGCCCACAAAATTCTGTGCCAAATTCACA 629135 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || || ||| | ||| || || ||||| || | | || ||||| | ||| Sbjct 629136 ATGGTCATCTGCAGGGACATCTCGCCGTGATGATAGGCTGACATTTCAGCCACCGAACCC 629195 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 | || || ||||| |||| || | | ||| ||||| ||| | | | || ||| Sbjct 629196 GACAATTGGGCCACTTTCACCTCACGCTTATCGTTACGCTTGAAGCACGTAAACATGACC 629255 Query 117545 TTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTCCTCA 117604 |||||||||| ||||| || |||||| ||| || || ||||| | | ||||| || Sbjct 629256 TTGCGCTGACCGGGCTTAAGGCCATCCACCAGACTGGGTATGGAACGTTCGTTGTCCGCA 629315 Score = 93.3 bits (102), Expect = 5e-14 Identities = 299/457 (65%), Gaps = 14/457 (3%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTA--AA 151933 || || ||||||||||| || || || ||||| | |||||| | ||| || || || Sbjct 628863 CCAGTGCCGATGCCCTCGGCGCCATTCACCAGTACCATCGGTATAATGGGAATATACCAA 628922 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 | | ||||| | | ||||| ||||| | | || | || | || || || || Sbjct 628923 ATT--GGCTCAATGCGCTGACCATCATCGACCTGATACTGCAGCAGGGGATCATCCAACG 628980 Query 151994 GATCGAATATCCGTCGAGTCATAGG--AC-TCAAACGCGTGAAGATGTATCGGGAGCTGG 152050 ||| | || | || || | || || |||| ||||| || || || | ||| | Sbjct 628981 GATGATAGATGAGACGTGTTAGCGGCGACATCAAT---GTGAAAATATAACGAGCGCTCG 629037 Query 152051 CCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGA 152110 | |||||||||||| | || || || || ||||| || ||||| | | |||| Sbjct 629038 CACAATCCTTGCCACCAGTGAGACGTGTACCGAACTGACCGCGCGGCTCCAACAAATTGA 629097 Query 152111 GGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTT 152170 ||||| | |||||| |||||||| |||||||||||||| || |||||| | | Sbjct 629098 TATTGTTTGAGCCCACAAAATTCTGTGCCAAATTCACAATGGTCATCTGCAGGGACATCT 629157 Query 152171 CACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGT 152230 | ||||| ||||| || | | || || | | |||| ||| || ||||| |||| | Sbjct 629158 CGCCGTGATGATAGGCTGACATTTCAGCCACCGAACCCGACAATTGGGCCACTTTCACCT 629217 Query 152231 CCGTCGTCAGGTTCTTCTTGAGACAGGCGTAA--ATCACCTTGCGCTGGGATGGTTTCAA 152288 | | | ||| ||||| || ||||| || ||||||||||| || || | Sbjct 629218 CACGCTTATCGTTACGCTTGAAGCA--CGTAAACATGACCTTGCGCTGACCGGGCTTAAG 629275 Query 152289 ACCGTCCACCACGTGAGGAATCGAACGCTTGATGTCC 152325 || ||||||| || || ||||| | | ||||| Sbjct 629276 GCCATCCACCAGACTGGGTATGGAACGTTCGTTGTCC 629312 >seq3134 Length=2474545 Score = 98.7 bits (108), Expect = 1e-15 Identities = 313/485 (65%), Gaps = 3/485 (1%) Strand=Plus/Minus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 |||| ||| ||||| || | ||||| |||||||| ||||||||||||| ||||||||| Sbjct 573865 ATCAGTTCGTTCGAGAAAGTGAGGCCGGGCATAAGGCCACGCTTCTTCAGCCAAAAGATA 573806 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 | | ||| || || ||||||||||| || ||| ||||| |||| | ||| | | Sbjct 573805 GAAGCAAAGCTGCCGCTAAAGAAGATGCCCTCAACAGCAGCAAATGCGATGATGCGCTCC 573746 Query 74904 GCGAA---CGGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACC 74960 | || | ||| | || | ||||||| | ||||| || || || || || || Sbjct 573745 CCAAAGTTAGCTGCCTTAGAGGATATCCAAGAAAGCGCCCAGTCGGCCTTCCGCTTAACT 573686 Query 74961 GCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGC 75020 || || | || || || || | || || | || | ||||| | Sbjct 573685 GCCGGCATTGTTTCAATTGCATTAAATAGATAATCACGCTGATGCGGATCGCGTATATAT 573626 Query 75021 TTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCG 75080 ||||||||| | |||| | ||||| || | ||| || ||| | | Sbjct 573625 GTGTCAATCAGGACGCTGTACATTTCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCA 573566 Query 75081 TAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCC 75140 ||||| | || ||||||| |||||| || |||| |||| | | | | |||||| Sbjct 573565 TAGAAGCAACGAGCCTCTGTAATCTGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCG 573506 Query 75141 ATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCA 75200 | || ||||| || |||||||| ||||| ||||| || | || || || ||||| Sbjct 573505 TTAACAATGCCATCGGAGGCGGCAAAAAAGGCCAGAACATGTGAAATGAAATGACGCTCG 573446 Query 75201 TCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTC 75260 | ||| || || |||| || |||| ||| | || ||| | ||||| || ||| Sbjct 573445 TTGTCTGTTAGGCGTGCCCAGTCAGTCAGATCCTTAGACAGATCCACTTCCTCCACAGTC 573386 Query 75261 CAGAA 75265 ||||| Sbjct 573385 CAGAA 573381 >seq3289 Length=20206255 Score = 86.0 bits (94), Expect = 7e-12 Identities = 200/292 (68%), Gaps = 21/292 (7%) Strand=Plus/Plus Query 158939 CAATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGG---AC 158995 ||| ||| || || | ||||||||||| ||||| ||||| ||||| || |||| | Sbjct 9624375 CAACAAATTCACGCACACTGTGCGTCTCGCCAGTGGCAATTACAAAATCGGCTGGCGCAT 9624434 Query 158996 CGGGCTGTTGGAGCATGAGCCACATGGCCTCGACGTAATC-CTGCGCGTGACCCCAGTCG 159054 || || || ||||| | |||||||||||| || || || ||| || ||||||||||| Sbjct 9624435 CGCGC---TGCAGCATCATCCACATGGCCTCCACATAGTCGCTG-GCATGACCCCAGTCA 9624490 Query 159055 CGCTTGGCATCCATGTTCCCGAGCTCGATGACTTTTCCA---GACTTTTTCCA---CTCA 159108 || || | |||| || || ||||| | | | ||||| || || | | || Sbjct 9624491 CGTTTCGAGTCCAGATTACCCAGCTCAA--AGTATTCCATTTGA-TTGAGCAATATCTTT 9624547 Query 159109 GC--CAGACCGAGCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCAT 159166 || |||| | |||| || || || |||||||| | | || |||||| ||||| Sbjct 9624548 GCAACAGATC--GCGTTATTTTACGTGTCACAAAATTCTCACCACGCCGTGGACTCTCAT 9624605 Query 159167 GGTTAAACAGAATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATT 159218 | || || || || || |||| || |||| || |||| ||| | ||||| Sbjct 9624606 GATTGAAGAGTATACCATTACAGGCAAACATGTCGTAGGCCTCCCTATAATT 9624657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547123452094000