Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq359 185 1e-41
seq3378 167 3e-36
seq3603 163 3e-35
seq3289 152 6e-32
seq3023 136 5e-27
>seq359
Length=456481
Score = 185 bits (204), Expect = 1e-41
Identities = 177/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| || || || ||||| |||||||| ||||| ||| | ||
Sbjct 66348 ATGCAGATCTTCGTGAAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGAGCCTAGT 66407
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| || ||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 66408 GATACCATTGAGAACGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGACCAG 66467
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || ||||| || |||||||| || |||| || || | |||| || ||
Sbjct 66468 CAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACGTTGTCAGATTACAAC 66527
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| |||||||| || || || | || | ||||| || |||||
Sbjct 66528 ATCCAGAAGGAATCGACCCTCCACTTGGTGCTTCGTCTGCGTGGTGG 66574
Score = 161 bits (178), Expect = 1e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| || || || ||||| |||||||| ||||| ||| |
Sbjct 66120 ATGCAGATCTTCGTGAAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGAGCCTTCC 66179
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | || | ||||| || || || |||||||||||||| ||||||||||||
Sbjct 66180 GATACGATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCAGACCAG 66239
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || || || |||||||| || |||| ||| || || | ||||| |||
Sbjct 66240 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTCTCTCTGACTACAAT 66299
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || || || | ||| | ||||| || |||||
Sbjct 66300 ATCCAGAAGGAGTCGACCCTCCACTTGGTCCTCCGTCTGCGTGGTGG 66346
Score = 161 bits (178), Expect = 1e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| || || || ||||| |||||||| ||||| ||| |
Sbjct 66576 ATGCAGATCTTCGTGAAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGAGCCTTCC 66635
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | || | ||||| || || || ||||||||||| |||||||||||||||
Sbjct 66636 GATACGATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 66695
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || ||||| || |||||||| || |||| ||| || || | ||||| |||
Sbjct 66696 CAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGTCGCACTCTCTCTGACTACAAT 66755
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || || || | || | ||||| || |||||
Sbjct 66756 ATCCAGAAGGAGTCGACCCTCCACTTGGTGCTTCGTCTGCGTGGTGG 66802
Score = 147 bits (162), Expect = 2e-30
Identities = 174/236 (74%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 27397 ATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTT 27456
|||| | |||||| ||||| || || || | || || ||||| || || || |||||
Sbjct 65883 ATTATCAAAATGCAGATCTTCGTAAAAACTTTGACGGGAAAGACCATCACCCTGGAGGTG 65942
Query 27457 GAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCT 27516
||| | |||| || | || ||||||| || || || |||||||||||||| |||
Sbjct 65943 GAGCCTTCCGATACGATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCT 66002
Query 27517 CCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCA 27576
||||||||||||||||| || || || || |||||||| || |||| ||| || || |
Sbjct 66003 CCAGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTCTCTCT 66062
Query 27577 GACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||| || |||| ||||| || || || || | ||| | ||||| || |||||
Sbjct 66063 GACTACAACATCCAGAAGGAGTCGACCCTCCACTTGGTCCTCCGTCTGCGTGGTGG 66118
>seq3378
Length=5191987
Score = 167 bits (184), Expect = 3e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | || ||||||||||| || | ||||| ||| ||
Sbjct 4217138 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACTATCACCTTGGAGGTGGAGCCATCC 4217197
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| | ||||| || || |||||||||||||| ||||| ||||| |||
Sbjct 4217198 GATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 4217257
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | || || ||||| ||||| | ||||||| || ||| | | ||||| ||
Sbjct 4217258 CAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGACGCACCTTGTCCGACTACAAC 4217317
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || |||||||| || | ||||| || |||||
Sbjct 4217318 ATCCAGAAGGAGTCGACCCTTCATCTGGTTCTCCGTCTGCGTGGTGG 4217364
Score = 161 bits (178), Expect = 1e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | || |||||||| || || | ||||| ||| ||
Sbjct 4216910 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCC 4216969
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| | ||||| || || |||||||||||||| ||||| ||||| |||
Sbjct 4216970 GATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 4217029
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | || || ||||| ||||| | ||||||| || ||| | | ||||| ||
Sbjct 4217030 CAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGACGCACCTTGTCCGACTACAAC 4217089
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || |||||||| || | ||||| || |||||
Sbjct 4217090 ATCCAGAAGGAGTCGACCCTTCATCTGGTTCTCCGTCTGCGTGGTGG 4217136
Score = 161 bits (178), Expect = 1e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | || |||||||| || || | ||||| ||| ||
Sbjct 4217594 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCC 4217653
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| | ||||| || || |||||||||||||| ||||| ||||| |||
Sbjct 4217654 GATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 4217713
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | || || ||||| ||||| | ||||||| || ||| | | ||||| ||
Sbjct 4217714 CAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGACGCACCTTGTCCGACTACAAC 4217773
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || |||||||| || | ||||| || |||||
Sbjct 4217774 ATCCAGAAGGAGTCGACCCTTCATCTGGTTCTCCGTCTGCGTGGTGG 4217820
Score = 152 bits (168), Expect = 6e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | || |||||||| || || | ||||| ||| ||
Sbjct 4216682 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCC 4216741
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| | ||||| || || |||||||||||||| ||||| ||||| |||
Sbjct 4216742 GATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 4216801
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | || || || || ||||| || ||||||| ||||| | | ||||| ||
Sbjct 4216802 CAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAAC 4216861
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| |||||| | || | || | ||||| || |||||
Sbjct 4216862 ATCCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGTCTGCGTGGTGG 4216908
Score = 152 bits (168), Expect = 6e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | || |||||||| || || | ||||| ||| ||
Sbjct 4217366 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCC 4217425
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| | ||||| || || |||||||||||||| ||||| ||||| |||
Sbjct 4217426 GATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 4217485
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | || || || || ||||| || ||||||| ||||| | | ||||| ||
Sbjct 4217486 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAAC 4217545
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| |||||| | || | || | ||||| || |||||
Sbjct 4217546 ATCCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGTCTGCGTGGTGG 4217592
Score = 149 bits (164), Expect = 7e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | || |||||||| || || | ||||| ||| ||
Sbjct 4217822 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCC 4217881
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| | ||||| || || |||||||||||||| ||||| ||||| |||
Sbjct 4217882 GATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 4217941
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| | || || || || ||||| || ||||||| ||||| | | ||||| ||
Sbjct 4217942 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAAC 4218001
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| |||||| | || | || ||||||| || || ||
Sbjct 4218002 ATTCAGAAGGAGTCCACTTTGCACTTGGTTCTGCGTCTGCGTGGCGG 4218048
>seq3603
Length=2672878
Score = 163 bits (180), Expect = 3e-35
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||||||||| || || || ||||||||||| || || | ||||| ||| |
Sbjct 316130 AATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCCTC 316189
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | ||| | ||| | ||||||||||| || ||||| || || ||||| ||||| ||
Sbjct 316190 TGACACCATCGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGATCA 316249
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||||||||| || ||||| || ||||| || ||||||| || ||||| | ||||| ||
Sbjct 316250 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGACTACAA 316309
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||||||| || ||| | || | || ||||||| || |||||
Sbjct 316310 CATTCAAAAGGAGTCGACTTTGCACTTGGTGCTGCGTCTGCGTGGTGG 316357
>seq3289
Length=20206255
Score = 152 bits (168), Expect = 6e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| ||||| || || || || || ||||| || ||||||||||| || |
Sbjct 14369794 ATGCAAATTTTTGTAAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 14369735
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | ||| | || || || || |||||||| || |||||||||||||| |||
Sbjct 14369734 GATACCATCGAGAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAG 14369675
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||| ||||||| ||||| ||||| | || |||| ||| ||||| | ||||| |||
Sbjct 14369674 CAGCGTTTAATTTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTTTCTGACTACAAT 14369615
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || || ||| | ||| | || | || || || |||||
Sbjct 14369614 ATCCAGAAAGAGTCTACTTTGCATTTGGTGCTCCGCCTGCGTGGTGG 14369568
>seq3023
Length=5802038
Score = 136 bits (150), Expect = 5e-27
Identities = 287/426 (67%), Gaps = 4/426 (1%)
Strand=Plus/Minus
Query 31979 TGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACC 32038
||| ||| ||||| ||||| ||||||||||| || | | ||| ||||| |||
Sbjct 629286 TGGTGGATGGCCTTAAGCCCGGTCAGCGCAAGGTCATGTTTACGTGCTTCAAGCGTAACG 629227
Query 32039 TGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATC 32098
| |||| |||| ||||| || ||||||| | ||||| || | |||||||
Sbjct 629226 ATAAGCGTGAGGTGAAAGTGGCCCAATTGTCGGGTTCGGTGGCTGAAATGTCAGCCTATC 629167
Query 32099 ACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTG 32158
| ||||||||| ||| || ||| |||||||| || | || ||||| ||||| ||
Sbjct 629166 ATCACGGCGAGATGTCCCTGCAGATGACCATTGTGAATTTGGCACAGAATTTTGTGGGCT 629107
Query 32159 CAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCA 32218
|||| || | || || | ||||| || ||||| || || || ||| | |||||||
Sbjct 629106 CAAACAATATCAATTTGTTGGAGCCGCGCGGTCAGTTCGGTACACGTCTCACTGGTGGCA 629047
Query 32219 AGGATGCTGCGAGCTCCCGTTACATCTTCAC--CCGTCTCGCACCTTCGACGCGCAAGAT 32276
||||| ||||||| | ||||| || ||||| | |||| || || || ||
Sbjct 629046 AGGATTGTGCGAGCGCTCGTTATATTTTCACATTGATGTCGCCGCT--AACACGTCTCAT 628989
Query 32277 TTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGA 32336
| | |||| ||| ||| | |||| |||| | | ||||| |||||||| | ||
Sbjct 628988 CTATCATCCGTTGGATGATCCCCTGCTGCAGTATCAGGTCGATGATGGTCAGCGCATTGA 628929
Query 32337 GCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGG 32396
||| | | || | ||| | | |||||| | ||||||| || || || ||||||||
Sbjct 628928 GCCAATTTGGTATATTCCCATTATACCGATGGTACTGGTGAATGGCGCCGAGGGCATCGG 628869
Query 32397 AACGGG 32402
|| ||
Sbjct 628868 CACTGG 628863
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570213946253600
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