Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq359 111 1e-19
seq3603 105 4e-18
seq3378 95.1 8e-15
>seq359
Length=456481
Score = 111 bits (122), Expect = 1e-19
Identities = 161/225 (72%), Gaps = 2/225 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| ||||| || |||||| || ||||| || || || || || ||
Sbjct 66109 AGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGA 66050
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| ||||| || ||||| || || | |||||| ||||| || || | |||||||
Sbjct 66049 CCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCC 65990
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||| || | || ||| | || || || |||||| |||| |||
Sbjct 65989 TTGTCTTGGATC-TTGGCCTTCACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGGGT 65931
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712
|| || || || || || ||||| || || |||||||| |||||
Sbjct 65930 GATGGTCTTTCCCGTCAAAGTTTTTACGAAGATCTGCATTTTGAT 65886
Score = 100 bits (110), Expect = 2e-16
Identities = 155/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| ||||| || ||||| || ||||| |||||||| | || ||
Sbjct 66565 AGACGAAGCACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCTGACAACGTGCGT 66506
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| ||||| || |||||||| || | |||||| ||||| || || | |||||||
Sbjct 66505 CCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCC 66446
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| ||| || | || ||| | ||| || || |||||| |||| ||
Sbjct 66445 TTGTC-CTGAATCTTGGCCTTCACGTTCTCAATGGTATCACTAGGCTCCACCTCCAGAGT 66387
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || | || ||||| || ||||||||
Sbjct 66386 AATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 66348
Score = 95.1 bits (104), Expect = 8e-15
Identities = 154/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| ||||| || |||||| || || || || || || || || ||
Sbjct 66793 AGACGAAGCACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGA 66734
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| ||||| || |||||||| || | |||||| ||||| || || | ||||||
Sbjct 66733 CCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGGAGGAATGCCCTCC 66674
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||| || | || ||| | || || || |||||| |||| ||
Sbjct 66673 TTGTCTTGGATC-TTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGT 66615
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || | || ||||| || ||||||||
Sbjct 66614 AATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 66576
Score = 91.5 bits (100), Expect = 9e-14
Identities = 153/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| ||||| || |||||| || || || || || || || || ||
Sbjct 66337 AGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGA 66278
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| ||||| || ||||| || || | |||||| ||||| || || | |||||||
Sbjct 66277 CCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCC 66218
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||| || | || ||| | || || || |||||| |||| ||
Sbjct 66217 TTGTCTTGGATC-TTGGCCTTGACGTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGT 66159
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || | || ||||| || ||||||||
Sbjct 66158 AATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 66120
>seq3603
Length=2672878
Score = 105 bits (116), Expect = 4e-18
Identities = 158/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| |||||| || | ||| ||||||||||||||| || || ||||| || ||
Sbjct 316348 AGACGCAGCACCAAGTGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTGCGG 316289
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || |||||||| || | |||||| || || || || | || ||
Sbjct 316288 CCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGAATACCTTCT 316229
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| ||| ||| | || || | || ||||| | ||| || |||| |||
Sbjct 316228 TTGTCTTGGAT-TTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGT 316170
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709
|| || || ||||| | ||||||||||| || ||||| ||
Sbjct 316169 GATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATTTT 316128
>seq3378
Length=5191987
Score = 95.1 bits (104), Expect = 8e-15
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | ||||||| ||||| || | |||| |||||| |||||||| || || ||
Sbjct 4218048 CCGCCACGCAGACGCAGAACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 4217989
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| || || | || || || || || ||||| || || |||||||| || || || ||
Sbjct 4217988 AAAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 4217929
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| ||||||||||| |||| || | ||||| | ||| || || ||||||
Sbjct 4217928 ATACCCTCCTTGTCCTGGATC-TTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCAC 4217870
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|||| ||| || || || || || || || || || || |||||||||
Sbjct 4217869 CTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217821
Score = 87.8 bits (96), Expect = 1e-12
Identities = 154/222 (69%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| || | |||| |||||| || ||||| || || || | || ||
Sbjct 4216899 AGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGT 4216840
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || ||||| || || |||||||| || || || || | ||||||
Sbjct 4216839 CCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCC 4216780
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | ||||| | ||| || || |||||| |||| |||
Sbjct 4216779 TTGTCCTGGATC-TTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGT 4216721
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709
|| || || || || || || || || || |||||||| ||
Sbjct 4216720 GATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATATT 4216679
Score = 87.8 bits (96), Expect = 1e-12
Identities = 153/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| || | |||| |||||| || ||||| || || || | || ||
Sbjct 4217583 AGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGT 4217524
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || ||||| || || |||||||| || || || || | ||||||
Sbjct 4217523 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCC 4217464
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | ||||| | ||| || || |||||| |||| |||
Sbjct 4217463 TTGTCCTGGATC-TTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGT 4217405
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || || || || || || || || |||||||||
Sbjct 4217404 GATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217365
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314677702072490
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |