Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq3134 212 5e-50 seq3603 163 2e-35 seq3289 159 3e-34 seq3378 147 2e-30 seq359 145 7e-30 >seq3134 Length=2474545 Score = 212 bits (234), Expect = 5e-50 Identities = 313/438 (71%), Gaps = 4/438 (1%) Strand=Plus/Minus Query 135308 GTGCGCCGCGAATTGGCGGACAATTTTTGTTATTATAACAAACATTATGATTGCATAGAA 135367 || || ||||| |||| ||||| ||||| || || ||| | || || ||| || | ||| Sbjct 1232535 GTCCGTCGCGAGCTGGCCGACAACTTTTGCTACTACAACGAGCACTACGATAGCCT-GAA 1232477 Query 135368 GGTGCTCCGGCA-TGGGCGCAACAAACTTTGCACGCTCACGCCTCTGATC-GCAGAGACT 135425 || || | | ||||| | ||||| |||| || || | ||| || || | Sbjct 1232476 GGGTCTGCACGACTGGGCATATCAAACGCTGCAGGCGCATCGCAAGGATAAGCGCAGTCC 1232417 Query 135426 TTTGTTACACGCGCGAGCAATGGGACCAAGCGTTGACGCATGACCCGTTGTGGAACGCGG 135485 | | || |||| |||| ||| ||| |||||| || | ||| |||||||| ||| Sbjct 1232416 GT-GCTATACGCTCGAGGAATTGGAGCAAGCGCGCACCTACGACGACCTGTGGAACTCGG 1232358 Query 135486 CACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAA 135545 |||| | |||||| | || ||||||||||| |||||| |||||||||| ||||| | Sbjct 1232357 CACAGCTGCAGCTGGTGAAGGAGGGCAAAATGCATGGATTTCTGCGCATGTACTGGGCCA 1232298 Query 135546 AAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTA 135605 ||||||||||||| ||| | | | |||| | ||| | || || ||| | | | Sbjct 1232297 AAAAGATATTGGAGTGGACGGAAACGCCAGAGCTGGCATTGGAATACAGCATACTGCTGA 1232238 Query 135606 ATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTTGTATGTGGTCTA 135665 | || | ||||| | || ||||||||| | |||||||| || || || |||||||| | Sbjct 1232237 ACGACAAGTACAGCCTGGACGGACGCGATCCCAATGGCTATGTGGGCTGCATGTGGTCCA 1232178 Query 135666 TTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCAAGATTCGCTATA 135725 | ||||||| ||||| ||||| |||||||||||| | | ||||||||||| ||||| | Sbjct 1232177 TAGGCGGTGTTCACGACCAAGGCTGGAAGGAGCGCGACATCTTTGGCAAGATACGCTACA 1232118 Query 135726 TGAACTATGACGGTTGTA 135743 |||||||| | || |||| Sbjct 1232117 TGAACTATCAGGGCTGTA 1232100 >seq3603 Length=2672878 Score = 163 bits (180), Expect = 2e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || ||||||||| | || || | || || || || || Sbjct 316131 ATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCCTCT 316190 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| ||||| |||||||||||||| || ||||| ||||| Sbjct 316191 GACACCATCGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAG 316250 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| || |||| || | ||| |||| || |||||| Sbjct 316251 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGACTACAAC 316310 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||||||||| || || ||||| ||||| |||| ||||| || Sbjct 316311 ATTCAAAAGGAGTCGACTTTGCACTTGGTGCTGCGTCTGCGTGGTGGTAT 316360 >seq3289 Length=20206255 Score = 159 bits (176), Expect = 3e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||||||||| || || || ||| | || |||||||| || |||||||| Sbjct 14369794 ATGCAAATTTTTGTAAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 14369735 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || ||| || || || ||||||||||| || || || ||||| Sbjct 14369734 GATACCATCGAGAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAG 14369675 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||||||||| | ||| ||||| || |||||||| || ||| |||| || ||||| Sbjct 14369674 CAGCGTTTAATTTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTTTCTGACTACAAT 14369615 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || || ||||| || || |||||||| | || |||| |||||| Sbjct 14369614 ATCCAGAAAGAGTCTACTTTGCATTTGGTGCTCCGCCTGCGTGGTGGC 14369567 >seq3378 Length=5191987 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| |||||| | || || | || ||||| || || Sbjct 4216909 CATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATC 4216968 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || || || ||||| || ||||| || || ||||| Sbjct 4216969 CGATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 4217028 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | ||| ||||| || ||||| || | ||| | ||||| ||||| Sbjct 4217029 GCAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGACGCACCTTGTCCGACTACAA 4217088 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||||||| | ||| ||||| | ||| |||| |||||||| Sbjct 4217089 CATCCAGAAGGAGTCGACCCTTCATCTGGTTCTCCGTCTGCGTGGTGGCAT 4217139 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| |||||| |||| || | || ||||| || || Sbjct 4217137 CATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACTATCACCTTGGAGGTGGAGCCATC 4217196 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || || || ||||| || || || || || ||||| Sbjct 4217197 CGATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCA 4217256 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | ||| ||||| || ||||| || | ||| | ||||| ||||| Sbjct 4217257 GCAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGACGCACCTTGTCCGACTACAA 4217316 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||||||| | ||| ||||| | ||| |||| |||||||| Sbjct 4217317 CATCCAGAAGGAGTCGACCCTTCATCTGGTTCTCCGTCTGCGTGGTGGCAT 4217367 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| |||||| | || || | || ||||| || || Sbjct 4217593 CATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATC 4217652 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || || || ||||| || ||||| || || ||||| Sbjct 4217653 CGATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 4217712 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | ||| ||||| || ||||| || | ||| | ||||| ||||| Sbjct 4217713 GCAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGACGCACCTTGTCCGACTACAA 4217772 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||||||| | ||| ||||| | ||| |||| |||||||| Sbjct 4217773 CATCCAGAAGGAGTCGACCCTTCATCTGGTTCTCCGTCTGCGTGGTGGCAT 4217823 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| |||||| | || || | || ||||| || || Sbjct 4217821 CATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATC 4217880 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || || || ||||| || || || || || ||||| Sbjct 4217881 CGATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCA 4217940 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||||| || | ||||||||| || |||| || | || | ||||| ||||| Sbjct 4217941 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAA 4218000 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| |||||||| || || || |||||| ||||| |||| || || Sbjct 4218001 CATTCAGAAGGAGTCCACTTTGCACTTGGTTCTGCGTCTGCGTGGCGG 4218048 >seq359 Length=456481 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||||||| |||| || ||| | || || || || ||||| || ||| Sbjct 65892 ATGCAGATCTTCGTAAAAACTTTGACGGGAAAGACCATCACCCTGGAGGTGGAGCCTTCC 65951 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| || || || || |||||||| || || || || || || || Sbjct 65952 GATACGATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCAGACCAG 66011 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| ||| ||||||| || || | || || |||||| Sbjct 66012 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTCTCTCTGACTACAAC 66071 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || ||||| | ||| |||| ||||| || Sbjct 66072 ATCCAGAAGGAGTCGACCCTCCACTTGGTCCTCCGTCTGCGTGGTGGTAT 66121 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | |||||||| || ||||| || ||| Sbjct 66120 ATGCAGATCTTCGTGAAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGAGCCTTCC 66179 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| ||||| || || |||||||| || || || || || || || Sbjct 66180 GATACGATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCAGACCAG 66239 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| ||| ||||||| || || | || || ||||| Sbjct 66240 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTCTCTCTGACTACAAT 66299 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || ||||| | ||| |||| ||||| || Sbjct 66300 ATCCAGAAGGAGTCGACCCTCCACTTGGTCCTCCGTCTGCGTGGTGGTAT 66349 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | |||||||| || ||||| || ||| Sbjct 66576 ATGCAGATCTTCGTGAAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGAGCCTTCC 66635 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| ||||| || || |||||||| || ||||| || || || || Sbjct 66636 GATACGATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 66695 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| ||| ||||||| || || | || || ||||| Sbjct 66696 CAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGTCGCACTCTCTCTGACTACAAT 66755 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || ||||| | ||| |||| ||||| || Sbjct 66756 ATCCAGAAGGAGTCGACCCTCCACTTGGTGCTTCGTCTGCGTGGTGGTAT 66805 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | |||||||| || ||||| || Sbjct 66348 ATGCAGATCTTCGTGAAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGAGCCTAGT 66407 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || ||||| ||||| || || || || || || || Sbjct 66408 GATACCATTGAGAACGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGACCAG 66467 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 |||||| | || | |||||||| ||| ||||||| | || |||| || |||||||| Sbjct 66468 CAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGA-CGCACGTTGTCAGATTACAA 66526 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| |||||| | || ||||| | ||| |||| ||||| || Sbjct 66527 CATCCAGAAGGAATCGACCCTCCACTTGGTGCTTCGTCTGCGTGGTGGTAT 66577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434844844425600