Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq3023 152 5e-32
>seq3023
Length=5802038
Score = 152 bits (168), Expect = 5e-32
Identities = 449/686 (65%), Gaps = 12/686 (2%)
Strand=Plus/Plus
Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279
|||||||||||||| ||||| ||||| | || |||||||| |||||| |||||||||
Sbjct 3647241 TTTCCGCTGCTGACCACGAAGCGTGTATTCTTTCGGGGCGTGGCCGAGGAACTGCTGTGG 3647300
Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339
||| | || || | ||||| | | | | || | || |||||
Sbjct 3647301 TTCATTGCCGGCAAGACCGATGCCAAGATATTGCAGGCAAAGAAAGTCCACATATGGGAT 3647360
Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGAC 34399
||| || | | || || ||||||||||| | || | | ||||| | || ||
Sbjct 3647361 GCTAACAGCACGCGCGAGTTTCTGGACAACTGCGGCCACACCGATCGGGCTGTCGGGGAT 3647420
Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAA 34459
|||| ||||| || || ||||||||| | |||||||| || |||||||| ||||
Sbjct 3647421 CTGGGTCCGGTTTATGGATTCCAGTGGCGTCACTTTGGCGCCGAGTATCGCACTTGCGAT 3647480
Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTT--GAAGC 34517
| || || | || ||||| | ||||| | ||| | ||||| | || | ||| |
Sbjct 3647481 GACGATTACACCGGCCAGGGTGTTGACCAATTACAGCAAGTGATACATACGATACGAACC 3647540
Query 34518 GGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGA 34577
| |||| || | | || | |||| ||| ||||| |||| |||| | || |
Sbjct 3647541 A-ATCCCTCG-GATCGTCGCATTATCATGTCCGCCTGGAATCCGATGGATATACCCAAAA 3647598
Query 34578 TGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCG------AATGGGGAGC 34631
||||||| || |||||||| ||| || |||| ||| || || || ||
Sbjct 3647599 TGGCGCTACCGCCGTGCCATTGCCTGGTTCAGTTCTTTGTCTCGCAGTCCAAGGGCGAAT 3647658
Query 34632 TGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTG 34691
||||||||||||| |||||||| | |||||||| | || || || ||||||||||
Sbjct 3647659 TGTCCTGCCAGCTATATCAACGCAGCGCTGACATGGGTCTCGGTGTTCCCTTCAACATTG 3647718
Query 34692 CTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGC 34751
| || ||||||||||| || | || || ||||| ||| || || || ||
Sbjct 3647719 CCTCCTATGCTCTGCTCACTTATTTAATAGCCCATGTGACGGGTCTGAAGCCCGGTGAAT 3647778
Query 34752 TGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCC 34811
| | || || | || ||||| || | || || ||||| || || | ||| | | |
Sbjct 3647779 TCATCCACACCATAGGCGATGCTCACGTTTATCTTAACCATATAGAACCGCTGCAGCAGC 3647838
Query 34812 AGCTGCAACGAGAGCCCCGA-CCGTTCCCCCAGCTCAAAATTATTCGAGCCGTCACCTCA 34870
|| | |||| |||||| | || || ||| ||||||| |||| || || ||
Sbjct 3647839 AGATAAAACG-TAGCCCCAAGCCTTTTCCCAAGCTCAACATTAAGCGCCAGGTTACAAAT 3647897
Query 34871 ATCGATGACTTTAGGAGCGAGGACTT 34896
||||| |||||| | |||||| ||
Sbjct 3647898 ATCGAGGACTTTTGCTACGAGGATTT 3647923
Score = 152 bits (168), Expect = 5e-32
Identities = 449/686 (65%), Gaps = 12/686 (2%)
Strand=Plus/Minus
Query 6449 AAGTCCTCGCTCCTAAAGTCATCGATTGAGGTGACGGCTCGAATAATTTTGAGCTGGGGG 6508
|| |||||| | |||||| ||||| || || || |||| ||||||| |||
Sbjct 3647923 AAATCCTCGTAGCAAAAGTCCTCGATATTTGTAACCTGGCGCTTAATGTTGAGCTTGGGA 3647864
Query 6509 AACGG-TCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGAT 6567
|| || | |||||| |||| | ||| | | ||| | || || ||||| || || |
Sbjct 3647863 AAAGGCTTGGGGCTA-CGTTTTATCTGCTGCTGCAGCGGTTCTATATGGTTAAGATAAAC 3647805
Query 6568 ATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGAT 6627
|| ||||| || | || || | | || || || || ||| ||||| || ||
Sbjct 3647804 GTGAGCATCGCCTATGGTGTGGATGAATTCACCGGGCTTCAGACCCGTCACATGGGCTAT 3647745
Query 6628 CATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCC 6687
| || ||||||||||| || ||||||||||| || || || | |||||||| |
Sbjct 3647744 TAAATAAGTGAGCAGAGCATAGGAGGCAATGTTGAAGGGAACACCGAGACCCATGTCAGC 3647685
Query 6688 CGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATT------CGCGACGTAGAATTGGCA 6741
|||||||| ||||||||||||| || || || || ||| |||| ||
Sbjct 3647684 GCTGCGTTGATATAGCTGGCAGGACAATTCGCCCTTGGACTGCGAGACAAAGAACTGAAC 3647625
Query 6742 GAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACAT 6801
||| |||||||| || |||||||| || | |||| |||| ||||| ||| ||||
Sbjct 3647624 CAGGCAATGGCACGGCGGTAGCGCCATTTTGGGTATATCCATCGGATTCCAGGCGGACAT 3647565
Query 6802 CACGATCCTTCTGTCATCAGGGTTCCGCTTC--AAGGTGTCGATCACGTACTGCAGCTGG 6859
| || | | || |||| | | ||| | || | ||||| | ||| | |||
Sbjct 3647564 GATAATGCGACGATC-CGAGGGAT-TGGTTCGTATCGTATGTATCACTTGCTGTAATTGG 3647507
Query 6860 TCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTC 6919
|| | ||||| || | || || | |||| |||||||| || |||||||| | |
Sbjct 3647506 TCAACACCCTGGCCGGTGTAATCGTCATCGCAAGTGCGATACTCGGCGCCAAAGTGACGC 3647447
Query 6920 CACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTG 6979
|||||||| || || ||||| |||| || || | ||||| | | || | |||
Sbjct 3647446 CACTGGAATCCATAAACCGGACCCAGATCCCCGACAGCCCGATCGGTGTGGCCGCAGTTG 3647387
Query 6980 TCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCC 7039
|||||||| || || | | || ||| ||||| || | || | | | | |
Sbjct 3647386 TCCAGAAACTCGCGCGTGCTGTTAGCATCCCATATGTGGACTTTCTTTGCCTGCAATATC 3647327
Query 7040 TTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTAC 7099
|||| | || || | |||||||||||| |||||| |||||||| || |
Sbjct 3647326 TTGGCATCGGTCTTGCCGGCAATGAACCACAGCAGTTCCTCGGCCACGCCCCGAAAGAAT 3647267
Query 7100 ACACGTTTCGTCGTCAGCAGCGGAAA 7125
||||| ||||| ||||||||||||||
Sbjct 3647266 ACACGCTTCGTGGTCAGCAGCGGAAA 3647241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448186587621600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |