Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq3023 152 5e-32 >seq3023 Length=5802038 Score = 152 bits (168), Expect = 5e-32 Identities = 449/686 (65%), Gaps = 12/686 (2%) Strand=Plus/Plus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 |||||||||||||| ||||| ||||| | || |||||||| |||||| ||||||||| Sbjct 3647241 TTTCCGCTGCTGACCACGAAGCGTGTATTCTTTCGGGGCGTGGCCGAGGAACTGCTGTGG 3647300 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 ||| | || || | ||||| | | | | || | || ||||| Sbjct 3647301 TTCATTGCCGGCAAGACCGATGCCAAGATATTGCAGGCAAAGAAAGTCCACATATGGGAT 3647360 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGAC 34399 ||| || | | || || ||||||||||| | || | | ||||| | || || Sbjct 3647361 GCTAACAGCACGCGCGAGTTTCTGGACAACTGCGGCCACACCGATCGGGCTGTCGGGGAT 3647420 Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAA 34459 |||| ||||| || || ||||||||| | |||||||| || |||||||| |||| Sbjct 3647421 CTGGGTCCGGTTTATGGATTCCAGTGGCGTCACTTTGGCGCCGAGTATCGCACTTGCGAT 3647480 Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTT--GAAGC 34517 | || || | || ||||| | ||||| | ||| | ||||| | || | ||| | Sbjct 3647481 GACGATTACACCGGCCAGGGTGTTGACCAATTACAGCAAGTGATACATACGATACGAACC 3647540 Query 34518 GGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGA 34577 | |||| || | | || | |||| ||| ||||| |||| |||| | || | Sbjct 3647541 A-ATCCCTCG-GATCGTCGCATTATCATGTCCGCCTGGAATCCGATGGATATACCCAAAA 3647598 Query 34578 TGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCG------AATGGGGAGC 34631 ||||||| || |||||||| ||| || |||| ||| || || || || Sbjct 3647599 TGGCGCTACCGCCGTGCCATTGCCTGGTTCAGTTCTTTGTCTCGCAGTCCAAGGGCGAAT 3647658 Query 34632 TGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTG 34691 ||||||||||||| |||||||| | |||||||| | || || || |||||||||| Sbjct 3647659 TGTCCTGCCAGCTATATCAACGCAGCGCTGACATGGGTCTCGGTGTTCCCTTCAACATTG 3647718 Query 34692 CTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGC 34751 | || ||||||||||| || | || || ||||| ||| || || || || Sbjct 3647719 CCTCCTATGCTCTGCTCACTTATTTAATAGCCCATGTGACGGGTCTGAAGCCCGGTGAAT 3647778 Query 34752 TGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCC 34811 | | || || | || ||||| || | || || ||||| || || | ||| | | | Sbjct 3647779 TCATCCACACCATAGGCGATGCTCACGTTTATCTTAACCATATAGAACCGCTGCAGCAGC 3647838 Query 34812 AGCTGCAACGAGAGCCCCGA-CCGTTCCCCCAGCTCAAAATTATTCGAGCCGTCACCTCA 34870 || | |||| |||||| | || || ||| ||||||| |||| || || || Sbjct 3647839 AGATAAAACG-TAGCCCCAAGCCTTTTCCCAAGCTCAACATTAAGCGCCAGGTTACAAAT 3647897 Query 34871 ATCGATGACTTTAGGAGCGAGGACTT 34896 ||||| |||||| | |||||| || Sbjct 3647898 ATCGAGGACTTTTGCTACGAGGATTT 3647923 Score = 152 bits (168), Expect = 5e-32 Identities = 449/686 (65%), Gaps = 12/686 (2%) Strand=Plus/Minus Query 6449 AAGTCCTCGCTCCTAAAGTCATCGATTGAGGTGACGGCTCGAATAATTTTGAGCTGGGGG 6508 || |||||| | |||||| ||||| || || || |||| ||||||| ||| Sbjct 3647923 AAATCCTCGTAGCAAAAGTCCTCGATATTTGTAACCTGGCGCTTAATGTTGAGCTTGGGA 3647864 Query 6509 AACGG-TCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGAT 6567 || || | |||||| |||| | ||| | | ||| | || || ||||| || || | Sbjct 3647863 AAAGGCTTGGGGCTA-CGTTTTATCTGCTGCTGCAGCGGTTCTATATGGTTAAGATAAAC 3647805 Query 6568 ATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGAT 6627 || ||||| || | || || | | || || || || ||| ||||| || || Sbjct 3647804 GTGAGCATCGCCTATGGTGTGGATGAATTCACCGGGCTTCAGACCCGTCACATGGGCTAT 3647745 Query 6628 CATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCC 6687 | || ||||||||||| || ||||||||||| || || || | |||||||| | Sbjct 3647744 TAAATAAGTGAGCAGAGCATAGGAGGCAATGTTGAAGGGAACACCGAGACCCATGTCAGC 3647685 Query 6688 CGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATT------CGCGACGTAGAATTGGCA 6741 |||||||| ||||||||||||| || || || || ||| |||| || Sbjct 3647684 GCTGCGTTGATATAGCTGGCAGGACAATTCGCCCTTGGACTGCGAGACAAAGAACTGAAC 3647625 Query 6742 GAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACAT 6801 ||| |||||||| || |||||||| || | |||| |||| ||||| ||| |||| Sbjct 3647624 CAGGCAATGGCACGGCGGTAGCGCCATTTTGGGTATATCCATCGGATTCCAGGCGGACAT 3647565 Query 6802 CACGATCCTTCTGTCATCAGGGTTCCGCTTC--AAGGTGTCGATCACGTACTGCAGCTGG 6859 | || | | || |||| | | ||| | || | ||||| | ||| | ||| Sbjct 3647564 GATAATGCGACGATC-CGAGGGAT-TGGTTCGTATCGTATGTATCACTTGCTGTAATTGG 3647507 Query 6860 TCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTC 6919 || | ||||| || | || || | |||| |||||||| || |||||||| | | Sbjct 3647506 TCAACACCCTGGCCGGTGTAATCGTCATCGCAAGTGCGATACTCGGCGCCAAAGTGACGC 3647447 Query 6920 CACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTG 6979 |||||||| || || ||||| |||| || || | ||||| | | || | ||| Sbjct 3647446 CACTGGAATCCATAAACCGGACCCAGATCCCCGACAGCCCGATCGGTGTGGCCGCAGTTG 3647387 Query 6980 TCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCC 7039 |||||||| || || | | || ||| ||||| || | || | | | | | Sbjct 3647386 TCCAGAAACTCGCGCGTGCTGTTAGCATCCCATATGTGGACTTTCTTTGCCTGCAATATC 3647327 Query 7040 TTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTAC 7099 |||| | || || | |||||||||||| |||||| |||||||| || | Sbjct 3647326 TTGGCATCGGTCTTGCCGGCAATGAACCACAGCAGTTCCTCGGCCACGCCCCGAAAGAAT 3647267 Query 7100 ACACGTTTCGTCGTCAGCAGCGGAAA 7125 ||||| ||||| |||||||||||||| Sbjct 3647266 ACACGCTTCGTGGTCAGCAGCGGAAA 3647241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448186587621600