Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq3603 104 2e-17 seq3289 102 6e-17 seq3378 95.1 9e-15 >seq3603 Length=2672878 Score = 104 bits (114), Expect = 2e-17 Identities = 174/249 (70%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 27770 TGCATCAACACAATAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTA 27829 |||| |||| | | | ||||||||||| ||||||||||| || || || || || | Sbjct 316113 TGCAGCAACGC--TTGGAAAATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCA 316170 Query 27830 CAATTGATGTCGAAAGCACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAA 27887 | | || ||||| | | ||| || | ||| ||||| ||||| ||||| Sbjct 316171 CCTTGGAGGTCGAGCCCTCTGACACCATCGAGAAT--GTCAAGGCTAAAATCCAAGACAA 316228 Query 27888 AGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGA 27947 ||||||| |||| || ||||| || | || |||||||| || || |||| || | Sbjct 316229 AGAAGGTATTCCACCAGATCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGG 316288 Query 27948 ACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 |||| | | || || |||||||| ||||| ||| |||||||| ||||| ||||| | Sbjct 316289 CCGCACCCTTTCGGACTACAACATTCAAAAGGAGTCGACTTTGCACTTGGTGCTGCGTCT 316348 Query 28008 GCGTGGCGG 28016 |||||| || Sbjct 316349 GCGTGGTGG 316357 >seq3289 Length=20206255 Score = 102 bits (112), Expect = 6e-17 Identities = 164/234 (70%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| || || || || || || |||| |||||| || Sbjct 14369794 ATGCAAATTTTTGTAAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAA----CC 14369739 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | || ||| |||| || ||| || || ||||||||||| |||| | Sbjct 14369738 GTCGGA-TACCATCGAGAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAG 14369680 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || |||||||| || || || || ||||| || | |||| | | || || | Sbjct 14369679 ATCAGCAGCGTTTAATTTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTTTCTGACT 14369620 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 |||| ||||| |||||| |||||||||||||| | || ||||||| |||| Sbjct 14369619 ACAATATCCAGAAAGAGTCTACTTTGCATTTGGTGCTCCGCCTGCGTGGTGGCG 14369566 >seq3378 Length=5191987 Score = 95.1 bits (104), Expect = 9e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || ||| |||| || ||||| || || || || |||||||| || |||| Sbjct 4216775 GACAAGGAGGGTATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAG 4216834 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | |||||||| ||||||||||| || ||| ||||||||| ||||| | Sbjct 4216835 GATGGACGTACTTTGTCCGACTACAACATCCAGAAGGAGTCCACTTTGCACTTGGTGCTC 4216894 Query 28003 CGTTTGCGTGGCGGC 28017 ||| ||||||| ||| Sbjct 4216895 CGTCTGCGTGGTGGC 4216909 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || ||| |||| || ||||| || || || || ||||| || || |||| Sbjct 4217459 GACAAGGAGGGTATTCCCCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAG 4217518 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | |||||||| ||||||||||| || ||| ||||||||| ||||| | Sbjct 4217519 GATGGACGTACTTTGTCCGACTACAACATCCAGAAGGAGTCCACTTTGCACTTGGTGCTC 4217578 Query 28003 CGTTTGCGTGGCGGC 28017 ||| ||||||| ||| Sbjct 4217579 CGTCTGCGTGGTGGC 4217593 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || ||| |||| || ||||| || || || || || || || || ||||| Sbjct 4217231 GACAAGGAGGGTATTCCCCCAGATCAGCAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAG 4217290 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| ||||||||| ||||||||||| || ||| || | ||| ||||| | Sbjct 4217291 GATGGACGCACCTTGTCCGACTACAACATCCAGAAGGAGTCGACCCTTCATCTGGTTCTC 4217350 Query 28003 CGTTTGCGTGGCGGC 28017 ||| ||||||| ||| Sbjct 4217351 CGTCTGCGTGGTGGC 4217365 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || || || || || || || || ||||| Sbjct 4217003 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAG 4217062 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| ||||||||| ||||||||||| || ||| || | ||| ||||| | Sbjct 4217063 GATGGACGCACCTTGTCCGACTACAACATCCAGAAGGAGTCGACCCTTCATCTGGTTCTC 4217122 Query 28003 CGTTTGCGTGGCGGC 28017 ||| ||||||| ||| Sbjct 4217123 CGTCTGCGTGGTGGC 4217137 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || ||||| || || || || || || || || ||||| Sbjct 4217687 GACAAGGAGGGCATTCCCCCAGATCAGCAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAG 4217746 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| ||||||||| ||||||||||| || ||| || | ||| ||||| | Sbjct 4217747 GATGGACGCACCTTGTCCGACTACAACATCCAGAAGGAGTCGACCCTTCATCTGGTTCTC 4217806 Query 28003 CGTTTGCGTGGCGGC 28017 ||| ||||||| ||| Sbjct 4217807 CGTCTGCGTGGTGGC 4217821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355803719402310