Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3289 123 2e-23 seq3603 118 7e-22 seq359 107 1e-18 >seq3289 Length=20206255 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || |||||||||||||| || || |||||||| || || || | || Sbjct 14369794 ATGCAAATTTTTGTAAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 14369735 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| ||||| | || | | ||||||||||| | || |||||||| Sbjct 14369734 GATACCATCGAGAATGTTAAAGCCAAGA-TCCAGGACAAAGAAGGAATTCCTCCAGATCA 14369676 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||||| || || ||||| || ||||||| | ||||| | || ||||| Sbjct 14369675 GCAGCGTTTAATTTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTTTCTGACTACAA 14369616 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 || || |||||||| || || ||||| || Sbjct 14369615 TATCCAGAAAGAGTCTACTTTGCATTTGGT 14369586 >seq3603 Length=2672878 Score = 118 bits (130), Expect = 7e-22 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || || || ||||||||||| || || || ||||| | || || || || Sbjct 316128 AAAATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCC 316187 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | |||| | |||||||||||| | || ||||| Sbjct 316188 TCTGACACCATCGAGAATGTCAAGGCTAAAA-TCCAAGACAAAGAAGGTATTCCACCAGA 316246 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCA--CTTTAGGCGAT 23784 ||| |||||| | || ||||||||||| || ||||| || | |||| |||| | || Sbjct 316247 TCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCG--GAC 316304 Query 23785 TACAACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||||||| ||||| ||||| || || || || || Sbjct 316305 TACAACATTCAAAAGGAGTCGACTTTGCACTTGGT 316339 >seq359 Length=456481 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| |||||||| || || ||||| || || || | | Sbjct 66348 ATGCAGATCTTCGTGAAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGAGCCTAGT 66407 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || || ||| ||||| || || | || ||||| || Sbjct 66408 GATACCATTGAGAACGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGACCAG 66467 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||||||||| ||||||||||| | |||||| || ||||||||| Sbjct 66468 CAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACGTTGTCAGATTACAAC 66527 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 66528 ATCCAGAAGGAATCGAC 66544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337953863273240