Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq3023 96.9 3e-15
>seq3023
Length=5802038
Score = 96.9 bits (106), Expect = 3e-15
Identities = 165/236 (70%), Gaps = 10/236 (4%)
Strand=Plus/Minus
Query 29647 CAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCC 29706
||||||||| | |||| ||| || ||||||||||| || | |||||||| || || ||
Sbjct 3647831 CAGCGGTTCTATATGGTTAAGATAAACGTGAGCATCGCCTATGGTGTGGATGAATTCACC 3647772
Query 29707 CGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTT 29766
|| | || || || || || || || | || ||||| |||| ||| ||| |||||
Sbjct 3647771 GGGCTTCAGACCCGTCACATGGGCTATTAAATAAGTGAGCAGAGCATAGGAGGCAATGTT 3647712
Query 29767 AAAGGGCACCCCGAGCCCCATGTC--CCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCT 29824
||||| || ||||| |||||||| | ||| | || || |||||||| || | ||
Sbjct 3647711 GAAGGGAACACCGAGACCCATGTCAGCGCTG--CGTTGATATAGCTGGCAGGACAATTCG 3647654
Query 29825 CCGTCG--CT----CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCAT 29874
|| | | || || | |||||| || | ||||||||| || || |||||
Sbjct 3647653 CCCTTGGACTGCGAGACAAAGAACTGAACCAGGCAATGGCACGGCGGTAGCGCCAT 3647598
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406096224957580
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |