Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq3023 96.9 3e-15 >seq3023 Length=5802038 Score = 96.9 bits (106), Expect = 3e-15 Identities = 165/236 (70%), Gaps = 10/236 (4%) Strand=Plus/Minus Query 29647 CAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCC 29706 ||||||||| | |||| ||| || ||||||||||| || | |||||||| || || || Sbjct 3647831 CAGCGGTTCTATATGGTTAAGATAAACGTGAGCATCGCCTATGGTGTGGATGAATTCACC 3647772 Query 29707 CGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTT 29766 || | || || || || || || || | || ||||| |||| ||| ||| ||||| Sbjct 3647771 GGGCTTCAGACCCGTCACATGGGCTATTAAATAAGTGAGCAGAGCATAGGAGGCAATGTT 3647712 Query 29767 AAAGGGCACCCCGAGCCCCATGTC--CCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCT 29824 ||||| || ||||| |||||||| | ||| | || || |||||||| || | || Sbjct 3647711 GAAGGGAACACCGAGACCCATGTCAGCGCTG--CGTTGATATAGCTGGCAGGACAATTCG 3647654 Query 29825 CCGTCG--CT----CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCAT 29874 || | | || || | |||||| || | ||||||||| || || ||||| Sbjct 3647653 CCCTTGGACTGCGAGACAAAGAACTGAACCAGGCAATGGCACGGCGGTAGCGCCAT 3647598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406096224957580