Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq3134 219 4e-52
>seq3134
Length=2474545
Score = 219 bits (242), Expect = 4e-52
Identities = 549/825 (67%), Gaps = 8/825 (1%)
Strand=Plus/Minus
Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319
|| |||||| ||| || || |||||||| |||||||| || |||||||| |||||
Sbjct 574189 TGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAACGAAATCATTTCC 574130
Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAAT 4379
|| || ||||||||| ||| |||||| |||| | | || | || ||||
Sbjct 574129 ATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCGACCCCAAGTTCAACCAGCAGA 574070
Query 4380 CGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTC 4439
|| || || ||||| || ||||| | | ||| ||| |||| || || || || || |
Sbjct 574069 CGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATGCCGATCAAATTG 574010
Query 4440 ACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCT 4499
|| || || |||| || | |||||| ||||| || || || || || | ||| || ||
Sbjct 574009 ACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCGGAGATGATCTCA 573950
Query 4500 TTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAA-ACACGCAAAATC 4558
| || ||| | | || | || || | |||| | ||| ||||| ||
Sbjct 573949 ATGATGCGCTCTCTGCAGGGACGCTGCACCAAATGCTGGAACATCAGGACA-GCAAAGTC 573891
Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618
||||||| || ||||| | | ||||||||||| || || || | |||||||| |
Sbjct 573890 GCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTGAGGCCGGGCATAAG 573831
Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678
|| | ||| || |||||||| |||| ||||| || |||||| ||||| || ||
Sbjct 573830 GCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTAAAGAAGATGCCCTCAAC 573771
Query 4679 GGCGGCAAACGCTACTAATCGGGACCCGAACG--AGCTGGCTTTGTCTTTAATCCATTTT 4736
|| ||||| || | | || | ||| || | ||||| ||| | | |||||
Sbjct 573770 AGCAGCAAATGCGA-TGATGCGCTCCCCAAAGTTAGCTGCCTTAGAGGAT-ATCCAAGAA 573713
Query 4737 AATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTA 4796
| ||||||| || || |||||| ||| ||||| | || || ||||||| | |
Sbjct 573712 AGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATTGCATTAAATAGATAA 573653
Query 4797 CTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGT 4856
| | || || | ||||| ||||| || || | ||| |||||||| || ||
Sbjct 573652 TCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTGTACATTTCCGAGTGG 573593
Query 4857 ATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCG 4916
| ||| || || || |||||||| || || ||||| | ||| ||||| | ||||||||
Sbjct 573592 ACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGTAATCTGAACTTCC 573533
Query 4917 TTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCC 4976
| | ||| | || || | || ||||| || || || || ||| |||||||| |||
Sbjct 573532 TGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCAAAAAAGGCC 573473
Query 4977 AAAACATGAGATATAAAGTACTGTTCGTCAGGCT-TAAGTTTTTTCCAGTGGGGCAAATC 5035
| |||||| || || || | | |||| | || | || | ||||| | || |||
Sbjct 573472 AGAACATGTGAAATGAAATGACGCTCGT-TGTCTGTTAGGCGTGCCCAGTCAGTCAGATC 573414
Query 5036 TTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080
|||| | ||| ||||| || |||||||| || || || || ||
Sbjct 573413 CTTAGACAGATCCACTTCCTCCACAGTCCAGAATGATGCCTCGGC 573369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426979180855490
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |