Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3134 219 4e-52 >seq3134 Length=2474545 Score = 219 bits (242), Expect = 4e-52 Identities = 549/825 (67%), Gaps = 8/825 (1%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || |||||| ||| || || |||||||| |||||||| || |||||||| ||||| Sbjct 574189 TGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAACGAAATCATTTCC 574130 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAAT 4379 || || ||||||||| ||| |||||| |||| | | || | || |||| Sbjct 574129 ATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCGACCCCAAGTTCAACCAGCAGA 574070 Query 4380 CGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTC 4439 || || || ||||| || ||||| | | ||| ||| |||| || || || || || | Sbjct 574069 CGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATGCCGATCAAATTG 574010 Query 4440 ACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCT 4499 || || || |||| || | |||||| ||||| || || || || || | ||| || || Sbjct 574009 ACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCGGAGATGATCTCA 573950 Query 4500 TTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAA-ACACGCAAAATC 4558 | || ||| | | || | || || | |||| | ||| ||||| || Sbjct 573949 ATGATGCGCTCTCTGCAGGGACGCTGCACCAAATGCTGGAACATCAGGACA-GCAAAGTC 573891 Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618 ||||||| || ||||| | | ||||||||||| || || || | |||||||| | Sbjct 573890 GCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTGAGGCCGGGCATAAG 573831 Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 || | ||| || |||||||| |||| ||||| || |||||| ||||| || || Sbjct 573830 GCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTAAAGAAGATGCCCTCAAC 573771 Query 4679 GGCGGCAAACGCTACTAATCGGGACCCGAACG--AGCTGGCTTTGTCTTTAATCCATTTT 4736 || ||||| || | | || | ||| || | ||||| ||| | | ||||| Sbjct 573770 AGCAGCAAATGCGA-TGATGCGCTCCCCAAAGTTAGCTGCCTTAGAGGAT-ATCCAAGAA 573713 Query 4737 AATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTA 4796 | ||||||| || || |||||| ||| ||||| | || || ||||||| | | Sbjct 573712 AGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATTGCATTAAATAGATAA 573653 Query 4797 CTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGT 4856 | | || || | ||||| ||||| || || | ||| |||||||| || || Sbjct 573652 TCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTGTACATTTCCGAGTGG 573593 Query 4857 ATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCG 4916 | ||| || || || |||||||| || || ||||| | ||| ||||| | |||||||| Sbjct 573592 ACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGTAATCTGAACTTCC 573533 Query 4917 TTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCC 4976 | | ||| | || || | || ||||| || || || || ||| |||||||| ||| Sbjct 573532 TGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCAAAAAAGGCC 573473 Query 4977 AAAACATGAGATATAAAGTACTGTTCGTCAGGCT-TAAGTTTTTTCCAGTGGGGCAAATC 5035 | |||||| || || || | | |||| | || | || | ||||| | || ||| Sbjct 573472 AGAACATGTGAAATGAAATGACGCTCGT-TGTCTGTTAGGCGTGCCCAGTCAGTCAGATC 573414 Query 5036 TTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 |||| | ||| ||||| || |||||||| || || || || || Sbjct 573413 CTTAGACAGATCCACTTCCTCCACAGTCCAGAATGATGCCTCGGC 573369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426979180855490