Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq466 590 9e-164
seq3134 244 1e-59
>seq466
Length=100518
Score = 590 bits (654), Expect = 9e-164
Identities = 1250/1851 (68%), Gaps = 32/1851 (2%)
Strand=Plus/Minus
Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862
|| |||||||| || ||||| ||||| || ||||| || ||| |||| || ||
Sbjct 43062 GCTGGTTTTGTGCGAAGATAATACATGCCTGTTTTAAGGCCCGCTTTCCAGGAATAAAAG 43003
Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922
|| || ||| | ||| ||| | || || || | ||||||||| | || ||||||
Sbjct 43002 TGGATTGATGTTAATTTTCCATAGTTTGGCTCAGCAACATGAATATTAAAAGATTGACTT 42943
Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982
||||| || || || ||||||||||| |||||||| ||| | | |||| | || |||
Sbjct 42942 TGATCAATAAACGCCCCTCTATCAGCTGCCATTTTAATAGTTGACTTTACCGATATCTCC 42883
Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA--GGTT-TGTATTTTGAATGGAA 77039
|| | |||||| | | | ||| || || || | | || | ||||||| || ||
Sbjct 42882 CATACGGTTTTGTACAAATCCCGGATTTCTTCGGGTATAGATTCTATATTTTGTATAGAT 42823
Query 77040 CCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAA 77099
|| | || |||||| ||| || || ||||||| |||||| | ||| ||||||
Sbjct 42822 CCTCGGCTTGCGATAATTTGATTTTTCATCTCATCATCCCACAAATCAAGCTCCGTTAAA 42763
Query 77100 ACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 77159
| | | | ||||||||| || | |||||| || || |||||||||| | || |||
Sbjct 42762 TCACGCAATAAATGAGGATTTACAACTTGAAACTCACCGGACAATACTCGTCTTGTATAA 42703
Query 77160 ATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCA 77219
|| || || || || || | || |||||||| |||| ||||| ||||| || ||
Sbjct 42702 ATGTTTGAAGTGTAGGGCTCGAACGACTCATTGTTGCCCATTATTTGCGCAGTGGATGCT 42643
Query 77220 GTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTAT----C 77275
|| ||||| || || | | ||| ||||| | ||| || ||| |||||| |
Sbjct 42642 GTGGGCATGGGAGCAATTAGCAAAGAGTTTCTAACACCGTG----CTG-TTTTATGGACC 42588
Query 77276 TTTTA-GATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTA 77334
||||| ||| | ||| ||||||||||||| ||| | ||| | ||| || ||||
Sbjct 42587 TTTTAAGATGATCCCAGTCCCAAAGATCTGTTGGTGATCTGTTCCACATATCATACTGTA 42528
Query 77335 GAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTA 77394
|| ||| || || | |||| |||| |||||||| || || || | | | |
Sbjct 42527 AAACTCCCTTGCTTACTGGACTTCCAATATAGGTTTCATACGGGCCATCCTTCTTGGACA 42468
Query 77395 GTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT 77454
||||||||| |||||||| ||||| || ||||| ||||| || || | | ||| | |
Sbjct 42467 ATTCACAACTAGCTTCCAAAGCTCCATAGTAAATAGTTTCAAAGATTTGTTGATTCAAAA 42408
Query 77455 CTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCT 77514
|||||| || ||| ||||| | | ||||| || |||||||| || || |
Sbjct 42407 GAGATGCTTCTTCGCTTTCATACGGAAACCTCATCAGAATTAATGCATCTGCAAACCCTT 42348
Query 77515 GAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGAT 77574
| || |||||||||||||| | || | ||| || |||| || ||||| | ||||
Sbjct 42347 GTACACCAATACCAATAGGGCGGTGCCGTAAATTTGATTTTTTTGCCTCTGGCAAGGGAT 42288
Query 77575 AATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTA 77634
|||| || || || || |||||||| || ||| | ||| | |||| || || || |
Sbjct 42287 AATAGTTTATATCAATTATTTTATTCAGGTTTTTGGTAACAATTTTAGTTACATCTTTCA 42228
Query 77635 GTTTAAGAAAATC---AAATCTTCCATCTATAACAAACATGTTCAAAGCTATAGATGCTA 77691
|||| || || | || || | | | ||||||||||| | ||||| |||||||
Sbjct 42227 GTTTTTTGAAGTCGTAAGATTTTTCGGCCGTCACAAACATGTTTAGGGCTATTGATGCTA 42168
Query 77692 GATTACAAACTGCTACCTCAT-TAGCGTTGGCATATTGTATTATCTCGGTACATAGATTA 77750
|||||| || |||| || | | ||| || ||| | | || || || |||| ||||
Sbjct 42167 AATTACATACAGCTATTTCGTCTGGCGCTGA-ATACTCAACAATTTCCGTGCATAAATTA 42109
Query 77751 CTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAA 77810
|| || || ||||| || | ||||||||| ||||| ||| | || || ||||| ||| ||
Sbjct 42108 CTGCACTTTATAGTTCCAACATTTTGTTGATTGCTTTTTCTGTTACACGAGTCTTTAAAA 42049
Query 77811 AGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTA 77870
|| || | || || || || || | || ||||| || || | ||| | | |
Sbjct 42048 AGCATGTAAGGGGTACCAGTCTCCACTTGAGATTCAATTATGGCAAACCAAAGAGATTGA 41989
Query 77871 GCTTTTATCATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAAT 77930
|| || | || || | ||||| |||| ||||||||| ||| | |||||||
Sbjct 41988 GCCTTAACAATTCGATTCTGTCGCCCCTCTTTTTCATATTTGACATACAATTTTTCAAAT 41929
Query 77931 TCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCA 77990
|| || ||||||||||| | || || ||||||| | ||| |||||||| ||||| ||
Sbjct 41928 TCTTCACCCCAAACATCTTGCAGACCGGGGCATTTGTGTGGACACATCAACGACCAATCC 41869
Query 77991 CCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCT 78050
| | | | ||| || ||||||||||||||||| ||||| | ||| |||||||||
Sbjct 41868 TCGTTGGCTTCAACCCGCTTCATAAAGAGATCAGGAATCCACAAGGCATAAAATAGATCC 41809
Query 78051 CGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCA 78110
|| | | |||||| || ||||| ||||| |||||||| || | ||| || | | ||
Sbjct 41808 CGAGCCCGATGTTCCTCTTTTCCAGTATTTTTTTTAAGGTCTAAAAATTCAAACACGTCT 41749
Query 78111 GAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCT 78170
|||||||| || || || || || || | |||| |||| |||| ||| ||||||||
Sbjct 41748 GAATGCCAAGGCTCCAGGTAAATAGCGAATGCTCCTGGTCTTTTACCACCACCCTGATCG 41689
Query 78171 ATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCA 78230
| ||| | || || ||| | ||||| | |||||| | | || || || || |||
Sbjct 41688 ACATAGCGTGCCACATTGTTAAATACTCTAAGCATTGGTACCAAGCCATTTGAAGTACCA 41629
Query 78231 TTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATAT----CCCTAT 78286
||||| || |||||| | | || |||| |||||| |||| | || || ||
Sbjct 41628 TTTGTGCCGGAAATAGAGGTGCCCTTTGCTCGAATA----CAATGAACATTAAGACCAAT 41573
Query 78287 TCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTAT 78346
||||||||| || || || | ||||| | | | ||| | | || || || ||
Sbjct 41572 GCCTCCTGCCGATTTGGAGATCATTGCGCACTGCTCTACTGTTTTAAATATTCCTTCAAT 41513
Query 78347 ACTGTC--AT-CCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 78403
| || || |||| |||||| ||||||||| || | ||| || | || |
Sbjct 41512 AGAATCCGATGCCAT--TGTTAA-AAGAAAACATGATGATAATTGGGGACGGTTTGTGGC 41456
Query 78404 TGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGT 78463
||| ||| | || || |||||||| ||||| | ||| || |||| ||| |||||
Sbjct 41455 AGCAGCAAAAAGCGTTGGTGATGCATGTGTAAAATAACGTTCCGATAGTAAATTATATGT 41396
Query 78464 TTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATG 78523
|||||| || || || || || ||| || || | || |||||||| | ||| ||
Sbjct 41395 TTCAATCGCAGAATCAATATCATCACCATGTATACCAATTGCGACACGCATTAGCATGTG 41336
Query 78524 CTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 78583
||| |||| ||| | | || ||| ||||| | ||| |||||| || | || ||
Sbjct 41335 CTGTGGTCGTTCCGCTATTTTGCCATTAATTTTAAGCAAATATGATCGCTCAAGTGTCTT 41276
Query 78584 AAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATT 78634
||| ||||| || || ||| ||| || | || ||||| || |||| ||
Sbjct 41275 AAATCCAAAGTAATTATATCCAAAATCACGATCATAAATTATTGCAGAGTT 41225
Score = 84.2 bits (92), Expect = 3e-11
Identities = 114/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 78746 AAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGC 78805
||| | ||| ||||||||||||| ||||| || || || ||||| ||||||| || ||
Sbjct 30746 AAAAACTTTCCTTGTTTCCTTGTGAAGATTGGAAACTGCAATTCTAGCAGCTAAAAGTGC 30687
Query 78806 ATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTC 78865
||| || | ||| || || || |||||||||| || || |||||| |||| | |||
Sbjct 30686 ATAGTCTGCATGATGGGTTGTTAGGCTGGCTGCTATCTCCGCTGCTAAATTATCCAGCTC 30627
Query 78866 TATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTT 78904
||||| || ||| || || || | || |||||
Sbjct 30626 CTGTGTTGTCACACCACAGTACAGCCCGTTTATGACTTT 30588
>seq3134
Length=2474545
Score = 244 bits (270), Expect = 1e-59
Identities = 561/837 (67%), Gaps = 11/837 (1%)
Strand=Plus/Minus
Query 47841 ACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 47900
|| |||||| |||||||| ||||| |||||| || ||||| |||||||| |||||
Sbjct 574201 ACGCCCATTCGCTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAAC 574142
Query 47901 GATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAAT 47960
|| || ||||||| || ||| ||||| || || || | ||| | || | |
Sbjct 574141 GAAATCATTTCCATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCGACCCCAAGT 574082
Query 47961 TCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATT 48020
|| | ||| | ||| || || || || |||||| ||| | | | ||||||||
Sbjct 574081 TCAACCAGCAGACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATG 574022
Query 48021 CCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCC 48080
|| || | || || || || || || ||||||||||| ||||| || || ||||||||
Sbjct 574021 CCGATCAAATTGACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCG 573962
Query 48081 ACTATTATCG--ATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTA 48138
|| ||| ||| | | | || || || | | || |||||| | ||||| |
Sbjct 573961 GAGATGATCTCAATGATGCGCTCTCTGCAG--GGACGCTGCACCAAATGCTGGAACATCA 573904
Query 48139 A-ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197
||| ||||| || ||||| || || || || | || | |||||| || || |||
Sbjct 573903 GGACA-GCAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTG 573845
Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGA-AAA 48256
|| |||||||| || ||||| || || |||||||| || | || |||| | | | |||
Sbjct 573844 AGGCCGGGCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGC-AAAGCTGCCGCTAAA 573786
Query 48257 GAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTT--- 48313
||| ||||| || || || ||||||||| | | | ||| || | | ||| | ||
Sbjct 573785 GAAGATGCCCTCAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGCCTTAGA 573726
Query 48314 GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373
| |||||| | ||||| || |||||| ||| || ||||||||||| || ||
Sbjct 573725 GGATATCCAAGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATTGC 573666
Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433
|||||| ||| | | | || ||| | || || || || | | || ||
Sbjct 573665 ATTAAATAGATAATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTGTA 573606
Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493
|||||| ||||| | ||| || || || |||||||| || || || || | || |||||
Sbjct 573605 CATTTCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGT 573546
Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553
||||| || ||| | ||| || || ||| |||||| || || || ||||| ||
Sbjct 573545 AATCTGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGC 573486
Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCA 48613
|||||||| || | |||||| ||| |||| |||||| || || |||
Sbjct 573485 GGCAAAAAAGGCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAGGCGTGCCCA 573426
Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670
|||| | | ||| || || | ||| ||||| || | ||||| ||||||||||| ||
Sbjct 573425 GTCAGTCAGATCCTTAGACAGATCCACTTCCTCCACAGTCCAGAATGATGCCTCGGC 573369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694551314139200
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