Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq466 590 9e-164 seq3134 244 1e-59 >seq466 Length=100518 Score = 590 bits (654), Expect = 9e-164 Identities = 1250/1851 (68%), Gaps = 32/1851 (2%) Strand=Plus/Minus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || |||||||| || ||||| ||||| || ||||| || ||| |||| || || Sbjct 43062 GCTGGTTTTGTGCGAAGATAATACATGCCTGTTTTAAGGCCCGCTTTCCAGGAATAAAAG 43003 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 || || ||| | ||| ||| | || || || | ||||||||| | || |||||| Sbjct 43002 TGGATTGATGTTAATTTTCCATAGTTTGGCTCAGCAACATGAATATTAAAAGATTGACTT 42943 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 ||||| || || || ||||||||||| |||||||| ||| | | |||| | || ||| Sbjct 42942 TGATCAATAAACGCCCCTCTATCAGCTGCCATTTTAATAGTTGACTTTACCGATATCTCC 42883 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA--GGTT-TGTATTTTGAATGGAA 77039 || | |||||| | | | ||| || || || | | || | ||||||| || || Sbjct 42882 CATACGGTTTTGTACAAATCCCGGATTTCTTCGGGTATAGATTCTATATTTTGTATAGAT 42823 Query 77040 CCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAA 77099 || | || |||||| ||| || || ||||||| |||||| | ||| |||||| Sbjct 42822 CCTCGGCTTGCGATAATTTGATTTTTCATCTCATCATCCCACAAATCAAGCTCCGTTAAA 42763 Query 77100 ACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 77159 | | | | ||||||||| || | |||||| || || |||||||||| | || ||| Sbjct 42762 TCACGCAATAAATGAGGATTTACAACTTGAAACTCACCGGACAATACTCGTCTTGTATAA 42703 Query 77160 ATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCA 77219 || || || || || || | || |||||||| |||| ||||| ||||| || || Sbjct 42702 ATGTTTGAAGTGTAGGGCTCGAACGACTCATTGTTGCCCATTATTTGCGCAGTGGATGCT 42643 Query 77220 GTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTAT----C 77275 || ||||| || || | | ||| ||||| | ||| || ||| |||||| | Sbjct 42642 GTGGGCATGGGAGCAATTAGCAAAGAGTTTCTAACACCGTG----CTG-TTTTATGGACC 42588 Query 77276 TTTTA-GATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTA 77334 ||||| ||| | ||| ||||||||||||| ||| | ||| | ||| || |||| Sbjct 42587 TTTTAAGATGATCCCAGTCCCAAAGATCTGTTGGTGATCTGTTCCACATATCATACTGTA 42528 Query 77335 GAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTA 77394 || ||| || || | |||| |||| |||||||| || || || | | | | Sbjct 42527 AAACTCCCTTGCTTACTGGACTTCCAATATAGGTTTCATACGGGCCATCCTTCTTGGACA 42468 Query 77395 GTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT 77454 ||||||||| |||||||| ||||| || ||||| ||||| || || | | ||| | | Sbjct 42467 ATTCACAACTAGCTTCCAAAGCTCCATAGTAAATAGTTTCAAAGATTTGTTGATTCAAAA 42408 Query 77455 CTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCT 77514 |||||| || ||| ||||| | | ||||| || |||||||| || || | Sbjct 42407 GAGATGCTTCTTCGCTTTCATACGGAAACCTCATCAGAATTAATGCATCTGCAAACCCTT 42348 Query 77515 GAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGAT 77574 | || |||||||||||||| | || | ||| || |||| || ||||| | |||| Sbjct 42347 GTACACCAATACCAATAGGGCGGTGCCGTAAATTTGATTTTTTTGCCTCTGGCAAGGGAT 42288 Query 77575 AATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTA 77634 |||| || || || || |||||||| || ||| | ||| | |||| || || || | Sbjct 42287 AATAGTTTATATCAATTATTTTATTCAGGTTTTTGGTAACAATTTTAGTTACATCTTTCA 42228 Query 77635 GTTTAAGAAAATC---AAATCTTCCATCTATAACAAACATGTTCAAAGCTATAGATGCTA 77691 |||| || || | || || | | | ||||||||||| | ||||| ||||||| Sbjct 42227 GTTTTTTGAAGTCGTAAGATTTTTCGGCCGTCACAAACATGTTTAGGGCTATTGATGCTA 42168 Query 77692 GATTACAAACTGCTACCTCAT-TAGCGTTGGCATATTGTATTATCTCGGTACATAGATTA 77750 |||||| || |||| || | | ||| || ||| | | || || || |||| |||| Sbjct 42167 AATTACATACAGCTATTTCGTCTGGCGCTGA-ATACTCAACAATTTCCGTGCATAAATTA 42109 Query 77751 CTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAA 77810 || || || ||||| || | ||||||||| ||||| ||| | || || ||||| ||| || Sbjct 42108 CTGCACTTTATAGTTCCAACATTTTGTTGATTGCTTTTTCTGTTACACGAGTCTTTAAAA 42049 Query 77811 AGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTA 77870 || || | || || || || || | || ||||| || || | ||| | | | Sbjct 42048 AGCATGTAAGGGGTACCAGTCTCCACTTGAGATTCAATTATGGCAAACCAAAGAGATTGA 41989 Query 77871 GCTTTTATCATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAAT 77930 || || | || || | ||||| |||| ||||||||| ||| | ||||||| Sbjct 41988 GCCTTAACAATTCGATTCTGTCGCCCCTCTTTTTCATATTTGACATACAATTTTTCAAAT 41929 Query 77931 TCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCA 77990 || || ||||||||||| | || || ||||||| | ||| |||||||| ||||| || Sbjct 41928 TCTTCACCCCAAACATCTTGCAGACCGGGGCATTTGTGTGGACACATCAACGACCAATCC 41869 Query 77991 CCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCT 78050 | | | | ||| || ||||||||||||||||| ||||| | ||| ||||||||| Sbjct 41868 TCGTTGGCTTCAACCCGCTTCATAAAGAGATCAGGAATCCACAAGGCATAAAATAGATCC 41809 Query 78051 CGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCA 78110 || | | |||||| || ||||| ||||| |||||||| || | ||| || | | || Sbjct 41808 CGAGCCCGATGTTCCTCTTTTCCAGTATTTTTTTTAAGGTCTAAAAATTCAAACACGTCT 41749 Query 78111 GAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCT 78170 |||||||| || || || || || || | |||| |||| |||| ||| |||||||| Sbjct 41748 GAATGCCAAGGCTCCAGGTAAATAGCGAATGCTCCTGGTCTTTTACCACCACCCTGATCG 41689 Query 78171 ATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCA 78230 | ||| | || || ||| | ||||| | |||||| | | || || || || ||| Sbjct 41688 ACATAGCGTGCCACATTGTTAAATACTCTAAGCATTGGTACCAAGCCATTTGAAGTACCA 41629 Query 78231 TTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATAT----CCCTAT 78286 ||||| || |||||| | | || |||| |||||| |||| | || || || Sbjct 41628 TTTGTGCCGGAAATAGAGGTGCCCTTTGCTCGAATA----CAATGAACATTAAGACCAAT 41573 Query 78287 TCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTAT 78346 ||||||||| || || || | ||||| | | | ||| | | || || || || Sbjct 41572 GCCTCCTGCCGATTTGGAGATCATTGCGCACTGCTCTACTGTTTTAAATATTCCTTCAAT 41513 Query 78347 ACTGTC--AT-CCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 78403 | || || |||| |||||| ||||||||| || | ||| || | || | Sbjct 41512 AGAATCCGATGCCAT--TGTTAA-AAGAAAACATGATGATAATTGGGGACGGTTTGTGGC 41456 Query 78404 TGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGT 78463 ||| ||| | || || |||||||| ||||| | ||| || |||| ||| ||||| Sbjct 41455 AGCAGCAAAAAGCGTTGGTGATGCATGTGTAAAATAACGTTCCGATAGTAAATTATATGT 41396 Query 78464 TTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATG 78523 |||||| || || || || || ||| || || | || |||||||| | ||| || Sbjct 41395 TTCAATCGCAGAATCAATATCATCACCATGTATACCAATTGCGACACGCATTAGCATGTG 41336 Query 78524 CTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 78583 ||| |||| ||| | | || ||| ||||| | ||| |||||| || | || || Sbjct 41335 CTGTGGTCGTTCCGCTATTTTGCCATTAATTTTAAGCAAATATGATCGCTCAAGTGTCTT 41276 Query 78584 AAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATT 78634 ||| ||||| || || ||| ||| || | || ||||| || |||| || Sbjct 41275 AAATCCAAAGTAATTATATCCAAAATCACGATCATAAATTATTGCAGAGTT 41225 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 78746 AAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGC 78805 ||| | ||| ||||||||||||| ||||| || || || ||||| ||||||| || || Sbjct 30746 AAAAACTTTCCTTGTTTCCTTGTGAAGATTGGAAACTGCAATTCTAGCAGCTAAAAGTGC 30687 Query 78806 ATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTC 78865 ||| || | ||| || || || |||||||||| || || |||||| |||| | ||| Sbjct 30686 ATAGTCTGCATGATGGGTTGTTAGGCTGGCTGCTATCTCCGCTGCTAAATTATCCAGCTC 30627 Query 78866 TATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTT 78904 ||||| || ||| || || || | || ||||| Sbjct 30626 CTGTGTTGTCACACCACAGTACAGCCCGTTTATGACTTT 30588 >seq3134 Length=2474545 Score = 244 bits (270), Expect = 1e-59 Identities = 561/837 (67%), Gaps = 11/837 (1%) Strand=Plus/Minus Query 47841 ACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 47900 || |||||| |||||||| ||||| |||||| || ||||| |||||||| ||||| Sbjct 574201 ACGCCCATTCGCTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAAC 574142 Query 47901 GATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAAT 47960 || || ||||||| || ||| ||||| || || || | ||| | || | | Sbjct 574141 GAAATCATTTCCATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCGACCCCAAGT 574082 Query 47961 TCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATT 48020 || | ||| | ||| || || || || |||||| ||| | | | |||||||| Sbjct 574081 TCAACCAGCAGACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATG 574022 Query 48021 CCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCC 48080 || || | || || || || || || ||||||||||| ||||| || || |||||||| Sbjct 574021 CCGATCAAATTGACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCG 573962 Query 48081 ACTATTATCG--ATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTA 48138 || ||| ||| | | | || || || | | || |||||| | ||||| | Sbjct 573961 GAGATGATCTCAATGATGCGCTCTCTGCAG--GGACGCTGCACCAAATGCTGGAACATCA 573904 Query 48139 A-ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 ||| ||||| || ||||| || || || || | || | |||||| || || ||| Sbjct 573903 GGACA-GCAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTG 573845 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGA-AAA 48256 || |||||||| || ||||| || || |||||||| || | || |||| | | | ||| Sbjct 573844 AGGCCGGGCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGC-AAAGCTGCCGCTAAA 573786 Query 48257 GAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTT--- 48313 ||| ||||| || || || ||||||||| | | | ||| || | | ||| | || Sbjct 573785 GAAGATGCCCTCAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGCCTTAGA 573726 Query 48314 GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 | |||||| | ||||| || |||||| ||| || ||||||||||| || || Sbjct 573725 GGATATCCAAGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATTGC 573666 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 |||||| ||| | | | || ||| | || || || || | | || || Sbjct 573665 ATTAAATAGATAATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTGTA 573606 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 |||||| ||||| | ||| || || || |||||||| || || || || | || ||||| Sbjct 573605 CATTTCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGT 573546 Query 48494 GATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGC 48553 ||||| || ||| | ||| || || ||| |||||| || || || ||||| || Sbjct 573545 AATCTGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGC 573486 Query 48554 AGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCA 48613 |||||||| || | |||||| ||| |||| |||||| || || ||| Sbjct 573485 GGCAAAAAAGGCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAGGCGTGCCCA 573426 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 |||| | | ||| || || | ||| ||||| || | ||||| ||||||||||| || Sbjct 573425 GTCAGTCAGATCCTTAGACAGATCCACTTCCTCCACAGTCCAGAATGATGCCTCGGC 573369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694551314139200