Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq466 655 0.0 seq3134 239 6e-58 >seq466 Length=100518 Score = 655 bits (726), Expect = 0.0 Identities = 1259/1841 (68%), Gaps = 30/1841 (2%) Strand=Plus/Minus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457 ||||||||||| || ||||| ||||| || ||||| || ||| |||| || || Sbjct 43062 GCTGGTTTTGTGCGAAGATAATACATGCCTGTTTTAAGGCCCGCTTTCCAGGAATAAAAG 43003 Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517 || || ||||| ||| ||| | || || || | ||||||||| | || |||||| Sbjct 43002 TGGATTGATGTTAATTTTCCATAGTTTGGCTCAGCAACATGAATATTAAAAGATTGACTT 42943 Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 ||||| || || || ||||||||||| |||||||| ||| | | |||| | || ||| Sbjct 42942 TGATCAATAAACGCCCCTCTATCAGCTGCCATTTTAATAGTTGACTTTACCGATATCTCC 42883 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA--GATT-TGTATTTTGAATGGAT 75634 || | |||||| | | | ||| || || || | |||| | ||||||| || ||| Sbjct 42882 CATACGGTTTTGTACAAATCCCGGATTTCTTCGGGTATAGATTCTATATTTTGTATAGAT 42823 Query 75635 CCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAA 75694 || | | |||||| ||| || |||||||||| |||||| | ||| |||||| Sbjct 42822 CCTCGGCTTGCGATAATTTGATTTTTCATCTCATCATCCCACAAATCAAGCTCCGTTAAA 42763 Query 75695 ACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAA 75754 | | | | ||||||||| |||| |||||| || || |||||||||| || || ||| Sbjct 42762 TCACGCAATAAATGAGGATTTACAACTTGAAACTCACCGGACAATACTCGTCTTGTATAA 42703 Query 75755 ATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCA 75814 || || || || || || | || |||||||| |||| ||||| ||||| || || Sbjct 42702 ATGTTTGAAGTGTAGGGCTCGAACGACTCATTGTTGCCCATTATTTGCGCAGTGGATGCT 42643 Query 75815 GTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTAT----C 75870 || ||||| || || | | ||| ||||| | ||| || ||| |||||| | Sbjct 42642 GTGGGCATGGGAGCAATTAGCAAAGAGTTTCTAACACCGTG----CTG-TTTTATGGACC 42588 Query 75871 TTTTA-GATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTA 75929 ||||| ||| | ||| ||||||||||||| |||| | ||| | ||| || |||| Sbjct 42587 TTTTAAGATGATCCCAGTCCCAAAGATCTGTTGGTGATCTGTTCCACATATCATACTGTA 42528 Query 75930 GAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTA 75989 || ||| ||||| | |||| |||| ||||| || | || ||||| | | | Sbjct 42527 AAACTCCCTTGCTTACTGGACTTCCAATATAGGTTTCATACGGGCCATCCTTCTTGGACA 42468 Query 75990 GTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT---AA 76046 ||| ||||| || || || || || || ||||| ||||| || || | | ||| || Sbjct 42467 ATTCACAACTAGCTTCCAAAGCTCCATAGTAAATAGTTTCAAAGATTTGTTGATTCAAAA 42408 Query 76047 GATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTC 76106 || | ||||| || ||| | ||| | | ||||| ||||||||||| | | Sbjct 42407 GAGAT---GCTTCTTCGCTTTCATACGGAAACCTCATCAGAATTAATGCATCTGCAAACC 42351 Query 76107 CCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAG 76166 | || || |||||||||||||| | || | ||| || ||| || ||||| | | Sbjct 42350 CTTGTACACCAATACCAATAGGGCGGTGCCGTAAATTTGATTTTTTTGCCTCTGGCAAGG 42291 Query 76167 GGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCT 76226 | ||||| || ||||| || |||||||| || ||| || ||| | |||| || || | Sbjct 42290 GATAATAGTTTATATCAATTATTTTATTCAGGTTTTTGGTAACAATTTTAGTTACATCTT 42231 Query 76227 TTAGTTTGAGAAAATC---AAATTTTCCATCTATCACAAACATATTAAGAGCTATAGATG 76283 | ||||| || || | ||||| | | |||||||||| || || ||||| |||| Sbjct 42230 TCAGTTTTTTGAAGTCGTAAGATTTTTCGGCCGTCACAAACATGTTTAGGGCTATTGATG 42171 Query 76284 CTAGATTACAAACGGCTACCTCAT-TAGCATTGGCATATTGTATTATCTCCGTGCATAGA 76342 ||| |||||| || |||| || | | || || ||| | | || |||||||||| | Sbjct 42170 CTAAATTACATACAGCTATTTCGTCTGGCGCTGA-ATACTCAACAATTTCCGTGCATAAA 42112 Query 76343 TTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTA 76402 ||||| ||||| |||||||||| ||||||||| ||||| ||| ||||||| ||||| ||| Sbjct 42111 TTACTGCACTTTATAGTTCCAACATTTTGTTGATTGCTTTTTCTGTTACACGAGTCTTTA 42052 Query 76403 TAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACT 76462 |||| | | || || ||||| || | || ||||| || || | ||| | | Sbjct 42051 AAAAGCATGTAAGGGGTACCAGTCTCCACTTGAGATTCAATTATGGCAAACCAAAGAGAT 41992 Query 76463 CTAGCTTTTATTATAGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCA 76522 ||| || | || || | |||| |||| ||||||||| ||| || |||| Sbjct 41991 TGAGCCTTAACAATTCGATTCTGTCGCCCCTCTTTTTCATATTTGACATACAATTTTTCA 41932 Query 76523 AATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCAC 76582 ||||| || ||||||||||| | || ||| || |||| | ||||||||||| ||||| Sbjct 41931 AATTCTTCACCCCAAACATCTTGCAGACCGGGGCATTTGTGTGGACACATCAACGACCAA 41872 Query 76583 TCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGA 76642 || | | | | |||||| ||||||||||||||||| ||||| | ||| ||||||| Sbjct 41871 TCCTCGTTGGCTTCAACCCGCTTCATAAAGAGATCAGGAATCCACAAGGCATAAAATAGA 41812 Query 76643 TCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATA 76702 || || | | | |||| || ||||| ||||| |||||||| |||| || || | | Sbjct 41811 TCCCGAGCCCGATGTTCCTCTTTTCCAGTATTTTTTTTAAGGTCTAAAAATTCAAACACG 41752 Query 76703 TCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGA 76762 || |||||||| || || || || || || | | || |||| |||| ||| |||||| Sbjct 41751 TCTGAATGCCAAGGCTCCAGGTAAATAGCGAATGCTCCTGGTCTTTTACCACCACCCTGA 41692 Query 76763 TCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTA 76822 || | ||| | || || ||| | ||||| | |||||| | | ||| || || ||| Sbjct 41691 TCGACATAGCGTGCCACATTGTTAAATACTCTAAGCATTGGTACCAAGCCATTTGAAGTA 41632 Query 76823 CCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATT 76882 |||||||| || |||||| | | || ||| |||||| | || | || || || Sbjct 41631 CCATTTGTGCCGGAAATAGAGGTGCCCTTTGCTCGAATACAATGAACATTAAGACCAATG 41572 Query 76883 CCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATA 76942 ||||||||| ||| ||||| | || || | | | ||| | | | || || || ||| Sbjct 41571 CCTCCTGCCGATTTGGAGATCATTGCGCACTGCTCTACTGTTTTAAATATTCCTTCAATA 41512 Query 76943 CTATC--AT-CCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCT 76999 ||| || |||| |||||| ||||||||| || | ||| || | || | Sbjct 41511 GAATCCGATGCCAT--TGTTAA-AAGAAAACATGATGATAATTGGGGACGGTTTGTGGCA 41455 Query 77000 GCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTT 77059 ||| ||| | || || |||||||| || || | ||| || |||| ||| |||||| Sbjct 41454 GCAGCAAAAAGCGTTGGTGATGCATGTGTAAAATAACGTTCCGATAGTAAATTATATGTT 41395 Query 77060 TCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGC 77119 ||||| | | || ||||| ||| || || | ||||||||||| | ||| ||| Sbjct 41394 TCAATCGCAGAATCAATATCATCACCATGTATACCAATTGCGACACGCATTAGCATGTGC 41335 Query 77120 TGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTA 77179 || |||||||| | | || ||| ||||| | ||| |||||| || | || ||| Sbjct 41334 TGTGGTCGTTCCGCTATTTTGCCATTAATTTTAAGCAAATATGATCGCTCAAGTGTCTTA 41275 Query 77180 AAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 || ||||| || || ||| ||| || | || ||||| || Sbjct 41274 AATCCAAAGTAATTATATCCAAAATCACGATCATAAATTAT 41234 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 77341 AAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGC 77400 ||| | ||| ||||||||||||| ||||| || || || ||||||||||||| || ||| Sbjct 30746 AAAAACTTTCCTTGTTTCCTTGTGAAGATTGGAAACTGCAATTCTAGCAGCTAAAAGTGC 30687 Query 77401 ATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATC 77454 |||||| | ||| || || || | |||||||||| || || |||||| |||| Sbjct 30686 ATAGTCTGCATGATGGGTTGTTAGGCTGGCTGCTATCTCCGCTGCTAAATTATC 30633 >seq3134 Length=2474545 Score = 239 bits (264), Expect = 6e-58 Identities = 561/837 (67%), Gaps = 11/837 (1%) Strand=Plus/Minus Query 46330 ACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 46389 || |||||| || ||||| || || |||||| || ||||| |||||||| ||||| Sbjct 574201 ACGCCCATTCGCTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAAC 574142 Query 46390 GATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAAT 46449 || || ||||||| || ||||||||| | || || | ||| | || | | Sbjct 574141 GAAATCATTTCCATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCGACCCCAAGT 574082 Query 46450 TCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATT 46509 || | ||| | ||| || || || || ||||| ||| | | | |||||||| Sbjct 574081 TCAACCAGCAGACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATG 574022 Query 46510 CCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCC 46569 || || | |||||||| || || || ||||||||||| |||||||| || |||||||| Sbjct 574021 CCGATCAAATTGACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCG 573962 Query 46570 GATAT--TATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTA 46627 || || | || ||| | | | || || || | |||| |||||| | ||||| | Sbjct 573961 GAGATGATCTCAATGATGCGCTCTCTGCA--GGGACGCTGCACCAAATGCTGGAACATCA 573904 Query 46628 -AACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 ||| ||||| || ||||| || || || || | || | |||||| || || ||| Sbjct 573903 GGACA-GCAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTG 573845 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAA 46745 || || ||||| || |||||||| || |||||||| |||| || |||| | || ||| Sbjct 573844 AGGCCGGGCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGC-AAAGCTGCCGCTAAA 573786 Query 46746 GAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT--A 46803 ||| ||||| || ||||| || ||||||| | | ||| || | | || | || | Sbjct 573785 GAAGATGCCCTCAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGCCTTAGA 573726 Query 46804 TGA-ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGC 46862 || ||||| | ||||| || ||||| ||| || ||||||||||| || || Sbjct 573725 GGATATCCAAGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATTGC 573666 Query 46863 ATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATA 46922 |||||| ||| | | | || ||| | |||||| || || | | || || Sbjct 573665 ATTAAATAGATAATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTGTA 573606 Query 46923 CATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 46982 |||||| || || | || || || || |||||||| || || || || | || || || Sbjct 573605 CATTTCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGT 573546 Query 46983 AATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGC 47042 |||||| || || | ||| || || || |||||| || || || ||||| || Sbjct 573545 AATCTGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGC 573486 Query 47043 AGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCA 47102 |||||||| |||| |||||| ||| |||| || | | || || ||| Sbjct 573485 GGCAAAAAAGGCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAGGCGTGCCCA 573426 Query 47103 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 |||| | | ||| || || | ||| ||||| || | ||||||||||| ||||| || Sbjct 573425 GTCAGTCAGATCCTTAGACAGATCCACTTCCTCCACAGTCCAGAATGATGCCTCGGC 573369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712813824969600