Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq466 655 0.0
seq3134 239 6e-58
>seq466
Length=100518
Score = 655 bits (726), Expect = 0.0
Identities = 1259/1841 (68%), Gaps = 30/1841 (2%)
Strand=Plus/Minus
Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457
||||||||||| || ||||| ||||| || ||||| || ||| |||| || ||
Sbjct 43062 GCTGGTTTTGTGCGAAGATAATACATGCCTGTTTTAAGGCCCGCTTTCCAGGAATAAAAG 43003
Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517
|| || ||||| ||| ||| | || || || | ||||||||| | || ||||||
Sbjct 43002 TGGATTGATGTTAATTTTCCATAGTTTGGCTCAGCAACATGAATATTAAAAGATTGACTT 42943
Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577
||||| || || || ||||||||||| |||||||| ||| | | |||| | || |||
Sbjct 42942 TGATCAATAAACGCCCCTCTATCAGCTGCCATTTTAATAGTTGACTTTACCGATATCTCC 42883
Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA--GATT-TGTATTTTGAATGGAT 75634
|| | |||||| | | | ||| || || || | |||| | ||||||| || |||
Sbjct 42882 CATACGGTTTTGTACAAATCCCGGATTTCTTCGGGTATAGATTCTATATTTTGTATAGAT 42823
Query 75635 CCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAA 75694
|| | | |||||| ||| || |||||||||| |||||| | ||| ||||||
Sbjct 42822 CCTCGGCTTGCGATAATTTGATTTTTCATCTCATCATCCCACAAATCAAGCTCCGTTAAA 42763
Query 75695 ACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAA 75754
| | | | ||||||||| |||| |||||| || || |||||||||| || || |||
Sbjct 42762 TCACGCAATAAATGAGGATTTACAACTTGAAACTCACCGGACAATACTCGTCTTGTATAA 42703
Query 75755 ATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCA 75814
|| || || || || || | || |||||||| |||| ||||| ||||| || ||
Sbjct 42702 ATGTTTGAAGTGTAGGGCTCGAACGACTCATTGTTGCCCATTATTTGCGCAGTGGATGCT 42643
Query 75815 GTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTAT----C 75870
|| ||||| || || | | ||| ||||| | ||| || ||| |||||| |
Sbjct 42642 GTGGGCATGGGAGCAATTAGCAAAGAGTTTCTAACACCGTG----CTG-TTTTATGGACC 42588
Query 75871 TTTTA-GATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTA 75929
||||| ||| | ||| ||||||||||||| |||| | ||| | ||| || ||||
Sbjct 42587 TTTTAAGATGATCCCAGTCCCAAAGATCTGTTGGTGATCTGTTCCACATATCATACTGTA 42528
Query 75930 GAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTA 75989
|| ||| ||||| | |||| |||| ||||| || | || ||||| | | |
Sbjct 42527 AAACTCCCTTGCTTACTGGACTTCCAATATAGGTTTCATACGGGCCATCCTTCTTGGACA 42468
Query 75990 GTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT---AA 76046
||| ||||| || || || || || || ||||| ||||| || || | | ||| ||
Sbjct 42467 ATTCACAACTAGCTTCCAAAGCTCCATAGTAAATAGTTTCAAAGATTTGTTGATTCAAAA 42408
Query 76047 GATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTC 76106
|| | ||||| || ||| | ||| | | ||||| ||||||||||| | |
Sbjct 42407 GAGAT---GCTTCTTCGCTTTCATACGGAAACCTCATCAGAATTAATGCATCTGCAAACC 42351
Query 76107 CCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAG 76166
| || || |||||||||||||| | || | ||| || ||| || ||||| | |
Sbjct 42350 CTTGTACACCAATACCAATAGGGCGGTGCCGTAAATTTGATTTTTTTGCCTCTGGCAAGG 42291
Query 76167 GGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCT 76226
| ||||| || ||||| || |||||||| || ||| || ||| | |||| || || |
Sbjct 42290 GATAATAGTTTATATCAATTATTTTATTCAGGTTTTTGGTAACAATTTTAGTTACATCTT 42231
Query 76227 TTAGTTTGAGAAAATC---AAATTTTCCATCTATCACAAACATATTAAGAGCTATAGATG 76283
| ||||| || || | ||||| | | |||||||||| || || ||||| ||||
Sbjct 42230 TCAGTTTTTTGAAGTCGTAAGATTTTTCGGCCGTCACAAACATGTTTAGGGCTATTGATG 42171
Query 76284 CTAGATTACAAACGGCTACCTCAT-TAGCATTGGCATATTGTATTATCTCCGTGCATAGA 76342
||| |||||| || |||| || | | || || ||| | | || |||||||||| |
Sbjct 42170 CTAAATTACATACAGCTATTTCGTCTGGCGCTGA-ATACTCAACAATTTCCGTGCATAAA 42112
Query 76343 TTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTA 76402
||||| ||||| |||||||||| ||||||||| ||||| ||| ||||||| ||||| |||
Sbjct 42111 TTACTGCACTTTATAGTTCCAACATTTTGTTGATTGCTTTTTCTGTTACACGAGTCTTTA 42052
Query 76403 TAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACT 76462
|||| | | || || ||||| || | || ||||| || || | ||| | |
Sbjct 42051 AAAAGCATGTAAGGGGTACCAGTCTCCACTTGAGATTCAATTATGGCAAACCAAAGAGAT 41992
Query 76463 CTAGCTTTTATTATAGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCA 76522
||| || | || || | |||| |||| ||||||||| ||| || ||||
Sbjct 41991 TGAGCCTTAACAATTCGATTCTGTCGCCCCTCTTTTTCATATTTGACATACAATTTTTCA 41932
Query 76523 AATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCAC 76582
||||| || ||||||||||| | || ||| || |||| | ||||||||||| |||||
Sbjct 41931 AATTCTTCACCCCAAACATCTTGCAGACCGGGGCATTTGTGTGGACACATCAACGACCAA 41872
Query 76583 TCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGA 76642
|| | | | | |||||| ||||||||||||||||| ||||| | ||| |||||||
Sbjct 41871 TCCTCGTTGGCTTCAACCCGCTTCATAAAGAGATCAGGAATCCACAAGGCATAAAATAGA 41812
Query 76643 TCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATA 76702
|| || | | | |||| || ||||| ||||| |||||||| |||| || || | |
Sbjct 41811 TCCCGAGCCCGATGTTCCTCTTTTCCAGTATTTTTTTTAAGGTCTAAAAATTCAAACACG 41752
Query 76703 TCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGA 76762
|| |||||||| || || || || || || | | || |||| |||| ||| ||||||
Sbjct 41751 TCTGAATGCCAAGGCTCCAGGTAAATAGCGAATGCTCCTGGTCTTTTACCACCACCCTGA 41692
Query 76763 TCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTA 76822
|| | ||| | || || ||| | ||||| | |||||| | | ||| || || |||
Sbjct 41691 TCGACATAGCGTGCCACATTGTTAAATACTCTAAGCATTGGTACCAAGCCATTTGAAGTA 41632
Query 76823 CCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATT 76882
|||||||| || |||||| | | || ||| |||||| | || | || || ||
Sbjct 41631 CCATTTGTGCCGGAAATAGAGGTGCCCTTTGCTCGAATACAATGAACATTAAGACCAATG 41572
Query 76883 CCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATA 76942
||||||||| ||| ||||| | || || | | | ||| | | | || || || |||
Sbjct 41571 CCTCCTGCCGATTTGGAGATCATTGCGCACTGCTCTACTGTTTTAAATATTCCTTCAATA 41512
Query 76943 CTATC--AT-CCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCT 76999
||| || |||| |||||| ||||||||| || | ||| || | || |
Sbjct 41511 GAATCCGATGCCAT--TGTTAA-AAGAAAACATGATGATAATTGGGGACGGTTTGTGGCA 41455
Query 77000 GCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTT 77059
||| ||| | || || |||||||| || || | ||| || |||| ||| ||||||
Sbjct 41454 GCAGCAAAAAGCGTTGGTGATGCATGTGTAAAATAACGTTCCGATAGTAAATTATATGTT 41395
Query 77060 TCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGC 77119
||||| | | || ||||| ||| || || | ||||||||||| | ||| |||
Sbjct 41394 TCAATCGCAGAATCAATATCATCACCATGTATACCAATTGCGACACGCATTAGCATGTGC 41335
Query 77120 TGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTA 77179
|| |||||||| | | || ||| ||||| | ||| |||||| || | || |||
Sbjct 41334 TGTGGTCGTTCCGCTATTTTGCCATTAATTTTAAGCAAATATGATCGCTCAAGTGTCTTA 41275
Query 77180 AAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220
|| ||||| || || ||| ||| || | || ||||| ||
Sbjct 41274 AATCCAAAGTAATTATATCCAAAATCACGATCATAAATTAT 41234
Score = 98.7 bits (108), Expect = 1e-15
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 77341 AAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGC 77400
||| | ||| ||||||||||||| ||||| || || || ||||||||||||| || |||
Sbjct 30746 AAAAACTTTCCTTGTTTCCTTGTGAAGATTGGAAACTGCAATTCTAGCAGCTAAAAGTGC 30687
Query 77401 ATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATC 77454
|||||| | ||| || || || | |||||||||| || || |||||| ||||
Sbjct 30686 ATAGTCTGCATGATGGGTTGTTAGGCTGGCTGCTATCTCCGCTGCTAAATTATC 30633
>seq3134
Length=2474545
Score = 239 bits (264), Expect = 6e-58
Identities = 561/837 (67%), Gaps = 11/837 (1%)
Strand=Plus/Minus
Query 46330 ACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 46389
|| |||||| || ||||| || || |||||| || ||||| |||||||| |||||
Sbjct 574201 ACGCCCATTCGCTGATATTCGCCCACTTTTTTCTCAAAGAAATTGGTTTTGCCGTCCAAC 574142
Query 46390 GATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAAT 46449
|| || ||||||| || ||||||||| | || || | ||| | || | |
Sbjct 574141 GAAATCATTTCCATGAATGTAAACGGATTCTTTGTGTTGTACAGTTTGCCGACCCCAAGT 574082
Query 46450 TCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATT 46509
|| | ||| | ||| || || || || ||||| ||| | | | ||||||||
Sbjct 574081 TCAACCAGCAGACGATCGGCCACAAACTCAATATATTCGGACATAAGTGCGCAATTCATG 574022
Query 46510 CCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCC 46569
|| || | |||||||| || || || ||||||||||| |||||||| || ||||||||
Sbjct 574021 CCGATCAAATTGACCGGCAGTGCGTCAGTAAGAAACTCCTGTTCAATGGTAACAGCATCG 573962
Query 46570 GATAT--TATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTA 46627
|| || | || ||| | | | || || || | |||| |||||| | ||||| |
Sbjct 573961 GAGATGATCTCAATGATGCGCTCTCTGCA--GGGACGCTGCACCAAATGCTGGAACATCA 573904
Query 46628 -AACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686
||| ||||| || ||||| || || || || | || | |||||| || || |||
Sbjct 573903 GGACA-GCAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTG 573845
Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAA 46745
|| || ||||| || |||||||| || |||||||| |||| || |||| | || |||
Sbjct 573844 AGGCCGGGCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGC-AAAGCTGCCGCTAAA 573786
Query 46746 GAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT--A 46803
||| ||||| || ||||| || ||||||| | | ||| || | | || | || |
Sbjct 573785 GAAGATGCCCTCAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGCCTTAGA 573726
Query 46804 TGA-ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGC 46862
|| ||||| | ||||| || ||||| ||| || ||||||||||| || ||
Sbjct 573725 GGATATCCAAGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATTGC 573666
Query 46863 ATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATA 46922
|||||| ||| | | | || ||| | |||||| || || | | || ||
Sbjct 573665 ATTAAATAGATAATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTGTA 573606
Query 46923 CATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 46982
|||||| || || | || || || || |||||||| || || || || | || || ||
Sbjct 573605 CATTTCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGT 573546
Query 46983 AATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGC 47042
|||||| || || | ||| || || || |||||| || || || ||||| ||
Sbjct 573545 AATCTGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGC 573486
Query 47043 AGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCA 47102
|||||||| |||| |||||| ||| |||| || | | || || |||
Sbjct 573485 GGCAAAAAAGGCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAGGCGTGCCCA 573426
Query 47103 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159
|||| | | ||| || || | ||| ||||| || | ||||||||||| ||||| ||
Sbjct 573425 GTCAGTCAGATCCTTAGACAGATCCACTTCCTCCACAGTCCAGAATGATGCCTCGGC 573369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712813824969600
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