Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq3134 102 8e-17 >seq3134 Length=2474545 Score = 102 bits (112), Expect = 8e-17 Identities = 336/521 (64%), Gaps = 6/521 (1%) Strand=Plus/Minus Query 23512 GCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCT 23571 ||||| || ||||| || || || || | |||| ||| || || || || | || Sbjct 573898 GCAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTGAGGCCG 573839 Query 23572 GGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATA 23631 ||||| | || || || || | |||||| || | |||||| ||| |||||| || Sbjct 573838 GGCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTAAAGAAGATG 573779 Query 23632 CCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGT---TGCATTATAATCAGAA 23688 ||||||||||| ||||| || | | || ||||| | ||| ||| | || Sbjct 573778 CCCTCAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGCCTTAGAG---GAT 573722 Query 23689 ATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTT 23748 ||||| | ||| | |||||| || || | |||||||||||||| || Sbjct 573721 ATCCAAGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATTGCATTA 573662 Query 23749 AAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATT 23808 || ||| || | | ||| ||||||||| ||||| || | || |||||| Sbjct 573661 AATAGATAATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTGTACATT 573602 Query 23809 TCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAAT 23868 || || || | ||| || || || |||||||| ||||| || || | ||| || | | Sbjct 573601 TCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGTAATC 573542 Query 23869 TGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCA 23928 ||||| || | ||| | | | | ||| ||||||||||| ||||| || ||| Sbjct 573541 TGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCA 573482 Query 23929 AAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAATCA 23988 || || || ||||||| | || ||||| | || | || || | ||| ||| Sbjct 573481 AAAAAGGCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAGGCGTGCCCAGTCA 573422 Query 23989 TTAATATCTTTTGATAAATCAACTTCATCAACTGTCCaaaa 24029 | | ||| || || | ||| ||||| || || ||||| || Sbjct 573421 GTCAGATCCTTAGACAGATCCACTTCCTCCACAGTCCAGAA 573381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521399803342000