Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq3134 102 8e-17
>seq3134
Length=2474545
Score = 102 bits (112), Expect = 8e-17
Identities = 336/521 (64%), Gaps = 6/521 (1%)
Strand=Plus/Minus
Query 23512 GCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCT 23571
||||| || ||||| || || || || | |||| ||| || || || || | ||
Sbjct 573898 GCAAAGTCGCAATGCAGTCCCTCGTCGCGGGAGATCAGTTCGTTCGAGAAAGTGAGGCCG 573839
Query 23572 GGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATA 23631
||||| | || || || || | |||||| || | |||||| ||| |||||| ||
Sbjct 573838 GGCATAAGGCCACGCTTCTTCAGCCAAAAGATAGAAGCAAAGCTGCCGCTAAAGAAGATG 573779
Query 23632 CCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGT---TGCATTATAATCAGAA 23688
||||||||||| ||||| || | | || ||||| | ||| ||| | ||
Sbjct 573778 CCCTCAACAGCAGCAAATGCGATGATGCGCTCCCCAAAGTTAGCTGCCTTAGAG---GAT 573722
Query 23689 ATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTT 23748
||||| | ||| | |||||| || || | |||||||||||||| ||
Sbjct 573721 ATCCAAGAAAGCGCCCAGTCGGCCTTCCGCTTAACTGCCGGCATTGTTTCAATTGCATTA 573662
Query 23749 AAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATT 23808
|| ||| || | | ||| ||||||||| ||||| || | || ||||||
Sbjct 573661 AATAGATAATCACGCTGATGCGGATCGCGTATATATGTGTCAATCAGGACGCTGTACATT 573602
Query 23809 TCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAAT 23868
|| || || | ||| || || || |||||||| ||||| || || | ||| || | |
Sbjct 573601 TCCGAGTGGACATTCTCCATGGCTATCTGAAAGCCATAGAAGCAACGAGCCTCTGTAATC 573542
Query 23869 TGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCA 23928
||||| || | ||| | | | | ||| ||||||||||| ||||| || |||
Sbjct 573541 TGAACTTCCTGGCTAAAACGCTCGACCAGATTCTCGTTAACAATGCCATCGGAGGCGGCA 573482
Query 23929 AAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAATCA 23988
|| || || ||||||| | || ||||| | || | || || | ||| |||
Sbjct 573481 AAAAAGGCCAGAACATGTGAAATGAAATGACGCTCGTTGTCTGTTAGGCGTGCCCAGTCA 573422
Query 23989 TTAATATCTTTTGATAAATCAACTTCATCAACTGTCCaaaa 24029
| | ||| || || | ||| ||||| || || ||||| ||
Sbjct 573421 GTCAGATCCTTAGACAGATCCACTTCCTCCACAGTCCAGAA 573381
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521399803342000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |