Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq359 145 5e-30 seq3378 138 8e-28 seq3603 136 3e-27 seq3289 107 1e-18 >seq359 Length=456481 Score = 145 bits (160), Expect = 5e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||| ||| || || ||||| |||||||||||||| Sbjct 66578 CATACCACCACGCAGACGAAGCACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATC 66519 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | ||| | || ||||| ||||| ||||||||||||| ||||||||| |||| Sbjct 66518 TGACAACGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGG 66459 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | || ||||| ||| ||||| ||||| |||| | ||||| || | | Sbjct 66458 AGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCAC-GTTCTCAATGGTATCACTAGGCT 66400 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| ||||| ||||||||||| ||||||||||||||||| ||||| Sbjct 66399 CCACCTCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 66348 Score = 145 bits (160), Expect = 5e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||| ||| || || |||||| ||||| ||||| || Sbjct 66806 CATACCACCACGCAGACGAAGCACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTC 66747 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || ||||| ||||| ||||||||||||| ||||||||| |||| Sbjct 66746 AGAGAGAGTGCGACCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTGG 66687 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | || ||||| || ||||| ||| | |||| | || || |||| | | Sbjct 66686 AGGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGAC-GTTCTCGATCGTATCGGAAGGCT 66628 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| ||||| ||||||||||| ||||||||||||||||| ||||| Sbjct 66627 CCACCTCCAGAGTAATGGTCTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 66576 Score = 138 bits (152), Expect = 8e-28 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || |||||| ||||| ||||| || | ||| ||| | || ||| Sbjct 66328 ACCAAGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAGAGAGTGCGACCATCTTCC 66269 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| ||||||| ||||||||| |||| ||| | || ||||| || Sbjct 66268 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGG 66209 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | |||| | || || |||| | |||||||||| ||||| ||||| Sbjct 66208 ATCTTGGCCTTGAC-GTTCTCGATCGTATCGGAAGGCTCCACCTCCAGAGTAATGGTCTT 66150 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||| ||||||||||||||||| ||||| Sbjct 66149 TCCCGTCAGGGTCTTCACGAAGATCTGCAT 66120 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || |||||| ||||||||||| || | ||| ||| | || ||| Sbjct 66100 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGACCATCTTCC 66041 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| ||||||| ||||||||| |||| ||| | || ||||| || Sbjct 66040 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATTCCCTCCTTGTCTTGG 65981 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| |||| | || || |||| | |||||||||| || || ||||| Sbjct 65980 ATCTTGGCCTTCAC-GTTCTCGATCGTATCGGAAGGCTCCACCTCCAGGGTGATGGTCTT 65922 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||| | || || |||||||| ||||| Sbjct 65921 TCCCGTCAAAGTTTTTACGAAGATCTGCAT 65892 >seq3378 Length=5191987 Score = 138 bits (152), Expect = 8e-28 Identities = 161/212 (76%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 ||||| ||||| || |||||| ||||||||||| |||| | || || || | || || Sbjct 4217346 ACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTG-CGTCCATCCTC 4217288 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| || || |||||||||||||||||||||| || | ||| ||||| ||| Sbjct 4217287 CAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTG 4217228 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| || | || ||| | ||||| |||| | |||||||||| || || |||| Sbjct 4217227 GATCTT-GGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATAGTCT 4217169 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || | |||||| |||||||| |||||| Sbjct 4217168 TGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217137 Score = 138 bits (152), Expect = 8e-28 Identities = 172/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||| ||| | ||| |||||| ||||||||||| || Sbjct 4217596 CATGCCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTC 4217537 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || | || | || ||||||||||| ||||| |||||||||||||||||||||| Sbjct 4217536 GGACAAAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGG 4217477 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||| ||||| ||| ||||| || | || ||| | ||||| |||| | | Sbjct 4217476 GGGAATACCCTCCTTGTCCTGGATCTT-GGCCTTAACATTCTCAATGGTATCGGATGGCT 4217418 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||||| || || ||||| || || | |||||| |||||||| |||||| Sbjct 4217417 CCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217365 Score = 136 bits (150), Expect = 3e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | ||||| ||| | ||| |||||| ||||||||||| || Sbjct 4216912 CATGCCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTC 4216853 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || | || | || ||||||||||| ||||| |||||||||||||||||||||| Sbjct 4216852 GGACAAAGTACGTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGG 4216793 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||| ||||| ||| ||||| || | || ||| | ||||| |||| | | Sbjct 4216792 GGGAATACCCTCCTTGTCCTGGATCTT-GGCCTTAACATTCTCAATGGTATCGGATGGCT 4216734 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| || || ||||| || || | |||||| |||||||| ||||| Sbjct 4216733 CCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 4216682 Score = 134 bits (148), Expect = 1e-26 Identities = 160/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 ||||| ||||| || |||||| ||||||||||| |||| | || || || | || || Sbjct 4217118 ACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTG-CGTCCATCCTC 4217060 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| || || |||||||||||||||||||||| || | || ||||| ||| Sbjct 4217059 CAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 4217000 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| || | || ||| | ||||| |||| | |||||||||| || || |||| Sbjct 4216999 GATCTT-GGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCT 4216941 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || | |||||| |||||||| |||||| Sbjct 4216940 TGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4216909 Score = 134 bits (148), Expect = 1e-26 Identities = 160/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 ||||| ||||| || |||||| ||||||||||| |||| | || || || | || || Sbjct 4217802 ACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAGGTG-CGTCCATCCTC 4217744 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| || || |||||||||||||||||||||| || | || ||||| ||| Sbjct 4217743 CAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 4217684 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| || | || ||| | ||||| |||| | |||||||||| || || |||| Sbjct 4217683 GATCTT-GGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCT 4217625 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || | |||||| |||||||| |||||| Sbjct 4217624 TGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217593 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || |||| ||| | ||| |||||| || |||||||| |||| Sbjct 4218048 CCGCCACGCAGACGCAGAACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 4217989 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 | || | || ||||||||||| ||||| |||||||||||||||||||||| || Sbjct 4217988 AAAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 4217929 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | ||| ||||| ||| ||||| || | || ||| | ||||| |||| | ||||| Sbjct 4217928 ATACCCTCCTTGTCCTGGATCTT-GGCCTTAACATTCTCAATGGTATCGGATGGCTCCAC 4217870 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| || || ||||| || || | |||||| |||||||| |||||| Sbjct 4217869 CTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 4217821 >seq3603 Length=2672878 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || || | ||| | || ||||| ||| | || ||||||||| |||||||| || Sbjct 316360 ATACCACCACGCAGACGCAGCACCAAGTGCAAAGTCGACTCCTTTTGAATGTTGTAGTCC 316301 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 | || ||| | || ||||||||||| ||||||||||||| |||||||||||||| Sbjct 316300 GAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGT 316241 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCC 44287 || | |||||| || || || || ||| | | | |||||||| | || || Sbjct 316240 GGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCG 316181 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| || || ||||| || |||||||| ||||| ||||||||||| Sbjct 316180 ACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 316131 >seq3289 Length=20206255 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||| || ||||| ||||| || | || ||| | || |||| |||||| || || || Sbjct 14369603 CTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCTTCCAACTGCTTGCCAGCGAA 14369662 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 || |||||||||||||||| ||| | ||||| || ||| ||||| |||| || | Sbjct 14369663 AATTAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTT-GGCTTTAACAT 14369721 Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | ||||| || | | ||| ||||| | || || ||||| ||||||||||| || | Sbjct 14369722 TCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTTA 14369781 Query 44325 CGAAGATTTGCAT 44337 | || |||||||| Sbjct 14369782 CAAAAATTTGCAT 14369794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359931038708010