Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12] 13,530 sequences; 206,026,697 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq359 147 5e-30 seq3289 141 2e-28 seq3603 138 3e-27 seq3378 114 3e-20 >seq359 Length=456481 Score = 147 bits (162), Expect = 5e-30 Identities = 162/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||| |||||| | || ||||| || |||||||| |||||||| Sbjct 65889 AAAATGC---AGATCTTCGTAAAAACTTTGACGGGAAAGACCATCACCCTGGAGGTGGAG 65945 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || ||||||||||| || ||||| || ||||| || ||||||||||| Sbjct 65946 CCTTCCGATACGATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCA 66005 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| || || ||||||||||| || || || |||||||| | ||||| | || Sbjct 66006 GACCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTCTCTCTGAC 66065 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| |||| || || || || || || |||| Sbjct 66066 TACAACATCCAGAAGGAGTCGACCCTCCA-CTTG 66098 Score = 140 bits (154), Expect = 8e-28 Identities = 157/207 (76%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || ||||| || || || || |||||||| || || Sbjct 66351 CAGATCTTCGTGAAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGA--GCCTAGTG 66408 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| |||||||| || |||||||||||||| || ||||||||||| ||||||| Sbjct 66409 ATACCATTGAGAACGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGACCAGC 66468 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| ||||| || || || ||||||||| | || | | ||||| ||| Sbjct 66469 AGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACGTTGTCAGATTACAACA 66528 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || ||||| || || || |||| Sbjct 66529 TCCAGAAGGAATCGACCCTCCA-CTTG 66554 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || ||||| || || || || |||||||| || || Sbjct 66123 CAGATCTTCGTGAAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGAGCCTTCCGAT 66182 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||| || ||||| || ||||||||||| |||||||| Sbjct 66183 ACGATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCAGACCAGCAG 66242 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || || || |||||||| | ||||| | || || || || Sbjct 66243 CGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTCTCTCTGACTACAATATC 66302 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 66303 CAGAAGGAGTCGACCCTCCA-CTTG 66326 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || ||||| || || || || |||||||| || || Sbjct 66579 CAGATCTTCGTGAAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGAGCCTTCCGAT 66638 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||| || ||||| || || || ||||| |||||||| Sbjct 66639 ACGATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAGCAG 66698 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || || || |||||||| | ||||| | || || || || Sbjct 66699 CGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGTCGCACTCTCTCTGACTACAATATC 66758 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 66759 CAGAAGGAGTCGACCCTCCA-CTTG 66782 >seq3289 Length=20206255 Score = 141 bits (156), Expect = 2e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| ||||| || || || ||||| || ||||| ||| || || Sbjct 14369791 CAAATTTTTGTAAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCGGAT 14369732 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || ||| ||||| ||||||||||||||||| ||||| || ||||| Sbjct 14369731 ACCATCGAGAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAGCAG 14369672 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || || ||| | |||||||| | || ||| | || || || || Sbjct 14369671 CGTTTAATTTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTTTCTGACTACAATATC 14369612 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || ||||| || || ||||| Sbjct 14369611 CAGAAAGAGTCTACTTTGCAT 14369591 >seq3603 Length=2672878 Score = 138 bits (152), Expect = 3e-27 Identities = 160/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| || |||||||| ||||| || || || |||||| | ||||| || Sbjct 316128 AAAATGC---AAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAG 316184 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| |||||||||||||| ||||| || || || ||||||||||| || || || Sbjct 316185 CCCTCTGACACCATCGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCACCA 316244 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || || ||||| ||||| || ||||| || ||||| | || ||| | || Sbjct 316245 GATCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGAC 316304 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| | ||||| || || || |||| |||| Sbjct 316305 TACAACATTCAAAAGGAGTCGACTTTGCA-CTTG 316337 >seq3378 Length=5191987 Score = 114 bits (126), Expect = 3e-20 Identities = 149/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || |||||| | |||||||| || || Sbjct 4216685 CAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCCGAT 4216744 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| |||||||| || || || || || || ||||| Sbjct 4216745 ACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAGCAG 4216804 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| ||||| || |||||| | ||| | |||| || ||| || Sbjct 4216805 CGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAACATC 4216864 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 4216865 CAGAAGGAGTCCACTTTGCA-CTTG 4216888 Score = 109 bits (120), Expect = 1e-18 Identities = 148/205 (72%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || |||||| | |||||||| || || Sbjct 4217369 CAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCCGAT 4217428 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| |||||||| || || || || || || ||||| Sbjct 4217429 ACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAGCAG 4217488 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||||| || |||||| | ||| | |||| || ||| || Sbjct 4217489 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAACATC 4217548 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 4217549 CAGAAGGAGTCCACTTTGCA-CTTG 4217572 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || |||||| | |||||||| || || Sbjct 4217825 CAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCCGAT 4217884 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||| |||||||| || || || || || || ||||| Sbjct 4217885 ACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAGCAG 4217944 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||||| || |||||| | ||| | |||| || ||| | Sbjct 4217945 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAACATT 4218004 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || |||| |||| || Sbjct 4218005 CAGAAGGAGTCCACTTTGCA-CTTGGTT 4218031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203522529434820