Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20virilis_20[refseq_20GCF_5F000005245.1_202006-07-12]
13,530 sequences; 206,026,697 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq359 147 5e-30
seq3289 141 2e-28
seq3603 138 3e-27
seq3378 114 3e-20
>seq359
Length=456481
Score = 147 bits (162), Expect = 5e-30
Identities = 162/214 (76%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || ||||| |||||| | || ||||| || |||||||| ||||||||
Sbjct 65889 AAAATGC---AGATCTTCGTAAAAACTTTGACGGGAAAGACCATCACCCTGGAGGTGGAG 65945
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
|| || || ||||||||||| || ||||| || ||||| || |||||||||||
Sbjct 65946 CCTTCCGATACGATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCA 66005
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094
|||||||| || || ||||||||||| || || || |||||||| | ||||| | ||
Sbjct 66006 GACCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTCTCTCTGAC 66065
Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128
|| ||| |||| || || || || || || ||||
Sbjct 66066 TACAACATCCAGAAGGAGTCGACCCTCCA-CTTG 66098
Score = 140 bits (154), Expect = 8e-28
Identities = 157/207 (76%), Gaps = 5/207 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || || || ||||| || || || || |||||||| || ||
Sbjct 66351 CAGATCTTCGTGAAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGA--GCCTAGTG 66408
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
| ||||| |||||||| || |||||||||||||| || ||||||||||| |||||||
Sbjct 66409 ATACCATTGAGAACGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGACCAGC 66468
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| || || ||||| ||||| || || || ||||||||| | || | | ||||| |||
Sbjct 66469 AGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACGTTGTCAGATTACAACA 66528
Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128
|||| || ||||| || || || ||||
Sbjct 66529 TCCAGAAGGAATCGACCCTCCA-CTTG 66554
Score = 136 bits (150), Expect = 1e-26
Identities = 154/205 (75%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || || || ||||| || || || || |||||||| || ||
Sbjct 66123 CAGATCTTCGTGAAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGAGCCTTCCGAT 66182
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| |||||||||||||| ||||| || ||||| || ||||||||||| ||||||||
Sbjct 66183 ACGATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCAGACCAGCAG 66242
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || || || |||||||| | ||||| | || || || ||
Sbjct 66243 CGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTCTCTCTGACTACAATATC 66302
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || || || ||||
Sbjct 66303 CAGAAGGAGTCGACCCTCCA-CTTG 66326
Score = 123 bits (136), Expect = 6e-23
Identities = 151/205 (74%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || || || ||||| || || || || |||||||| || ||
Sbjct 66579 CAGATCTTCGTGAAGACCCTGACGGGAAAGACCATTACTCTGGAGGTGGAGCCTTCCGAT 66638
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| |||||||||||||| ||||| || ||||| || || || ||||| ||||||||
Sbjct 66639 ACGATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAGCAG 66698
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| ||||| || || || |||||||| | ||||| | || || || ||
Sbjct 66699 CGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGTCGCACTCTCTCTGACTACAATATC 66758
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || || || ||||
Sbjct 66759 CAGAAGGAGTCGACCCTCCA-CTTG 66782
>seq3289
Length=20206255
Score = 141 bits (156), Expect = 2e-28
Identities = 152/201 (76%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || ||||| ||||| || || || ||||| || ||||| ||| || ||
Sbjct 14369791 CAAATTTTTGTAAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCGGAT 14369732
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||| || ||| ||||| ||||||||||||||||| ||||| || |||||
Sbjct 14369731 ACCATCGAGAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAGCAG 14369672
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || ||||| || || ||| | |||||||| | || ||| | || || || ||
Sbjct 14369671 CGTTTAATTTTCGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTTTCTGACTACAATATC 14369612
Query 178104 CAAAAAGAATCAACACTGCAT 178124
|| ||||| || || |||||
Sbjct 14369611 CAGAAAGAGTCTACTTTGCAT 14369591
>seq3603
Length=2672878
Score = 138 bits (152), Expect = 3e-27
Identities = 160/214 (75%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| |||| || |||||||| ||||| || || || |||||| | ||||| ||
Sbjct 316128 AAAATGC---AAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAG 316184
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
||| |||||||||||||| ||||| || || || ||||||||||| || || ||
Sbjct 316185 CCCTCTGACACCATCGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCACCA 316244
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094
|| ||||| || || ||||| ||||| || ||||| || ||||| | || ||| | ||
Sbjct 316245 GATCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGAC 316304
Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128
|| ||| | ||||| || || || |||| ||||
Sbjct 316305 TACAACATTCAAAAGGAGTCGACTTTGCA-CTTG 316337
>seq3378
Length=5191987
Score = 114 bits (126), Expect = 3e-20
Identities = 149/205 (73%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || | || || || || |||||| | |||||||| || ||
Sbjct 4216685 CAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCCGAT 4216744
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||| || || ||||| |||||||| || || || || || || |||||
Sbjct 4216745 ACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAGCAG 4216804
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||||||||| ||||| || |||||| | ||| | |||| || ||| ||
Sbjct 4216805 CGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAACATC 4216864
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || |||| ||||
Sbjct 4216865 CAGAAGGAGTCCACTTTGCA-CTTG 4216888
Score = 109 bits (120), Expect = 1e-18
Identities = 148/205 (72%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || | || || || || |||||| | |||||||| || ||
Sbjct 4217369 CAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCCGAT 4217428
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||| || || ||||| |||||||| || || || || || || |||||
Sbjct 4217429 ACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAGCAG 4217488
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||||||||| || ||||| || |||||| | ||| | |||| || ||| ||
Sbjct 4217489 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAACATC 4217548
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || |||| ||||
Sbjct 4217549 CAGAAGGAGTCCACTTTGCA-CTTG 4217572
Score = 105 bits (116), Expect = 2e-17
Identities = 149/208 (72%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || | || || || || |||||| | |||||||| || ||
Sbjct 4217825 CAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCCGAT 4217884
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||| || || ||||| |||||||| || || || || || || |||||
Sbjct 4217885 ACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAGCAG 4217944
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||||||||| || ||||| || |||||| | ||| | |||| || ||| |
Sbjct 4217945 CGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAACATT 4218004
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131
|| || || || || |||| |||| ||
Sbjct 4218005 CAGAAGGAGTCCACTTTGCA-CTTGGTT 4218031
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203522529434820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |