Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq104 147 2e-30 seq61 100 3e-16 >seq104 Length=21139217 Score = 147 bits (162), Expect = 2e-30 Identities = 367/550 (67%), Gaps = 12/550 (2%) Strand=Plus/Minus Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014 |||||||| || || ||||| || || |||||||| | |||||| ||||| || Sbjct 9083699 AACATCAGCACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAG 9083640 Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAAC--GACC 17072 || |||| || ||||| || || ||||| | ||| || || | |||||| | | Sbjct 9083639 AAGGTCAGTCCAGGCATAAGACCGCGCTTCTTAAGCCAGAAAATAGAGGCGAAGCTGCCG 9083580 Query 17073 CAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC-G 17131 | ||||| | || ||||| |||| ||||| ||||| | || || | | | || | Sbjct 9083579 CTGAAAA--AGATGCCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCAAAATTGGCCG 9083522 Query 17132 TCTTTGTTACGAA-TCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATC--CATC 17188 ||| | | ||| |||| | |||| || || || |||| | || | |||| Sbjct 9083521 ACTTAG--AGGAAATCCAGGAAAGGGCCCAGTCTGCCTTGCGCTTCA--CAGCCGGCATC 9083466 Query 17189 GTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATG 17248 ||||| || || || || | | |||| | || | || || || || ||||| Sbjct 9083465 GTTTCAATAGCGTTGAACAGGTACTCTCGCTGGTGCGGATCCCGGATGTAAGTGTCGATC 9083406 Query 17249 AGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCAT 17308 || | |||||||| || ||||| | |||||||||||| |||||||| ||||| ||||| Sbjct 9083405 AGCACACTGTACATCTCCGAGTGCACGTTCTCCATGGCAATCTGAAAGCCGTAGAAGCAG 9083346 Query 17309 CGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATG 17368 || || || | || || || ||| ||| |||||| | ||||| ||||| |||||| Sbjct 9083345 CGTGCCTCTGTGATCTGCACCTCCTGACTGAAGCGTTCCACCAGATTCTCGTTTACGATG 9083286 Query 17369 CCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTA 17428 || ||| |||||||| || |||| | ||| ||||||| ||||| | Sbjct 9083285 CCATCGGAGGCGGCGAAGAAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTC 9083226 Query 17429 AGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTA 17488 || | ||||||| | | || ||||| | |||||| || ||| |||||| ||| Sbjct 9083225 AGGCGGTGCCAGTCAGTAAGGTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAG 9083166 Query 17489 GCCACTGCCT 17498 ||| | |||| Sbjct 9083165 GCCTCAGCCT 9083156 >seq61 Length=22324452 Score = 100 bits (110), Expect = 3e-16 Identities = 180/258 (70%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842 ||||| || || | ||| ||||| | | || |||||||| | | || |||| || Sbjct 16381047 TTCATGTACCGAACCTTGCCGAAAATAGCCCGCTCCTTCCAACCCATATCATGGACGCCG 16380988 Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTT 119901 | | | ||| | ||| ||||| || ||||||||||| |||||| | ||| |||||| Sbjct 16380987 CCAATTGACCACATGCAGCCCACATAGCCGTTGGGATCGCGTCCATCCAGACT-GTATTT 16380929 Query 119902 ATCGTTTAAGTAGATACAG-ACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTA 119960 ||||| | ||| | || | ||||| || || || | |||||||||| | Sbjct 16380928 GTCGTTCAGCAGGATCGCGTACTCC-AACGCCTCCTCTGGGGTTGCAGTCCATTCCAGAA 16380870 Query 119961 tttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAA 120020 | ||||| ||||||||||| || || | || |||||||| || || || |||| || | Sbjct 16380869 TCTTTTTGGCCCAGTACATCCGCAAAAAGCCGTGCATTTTTCCCTCGCGCACCAGCTGCA 16380810 Query 120021 GTTGTGCGGCGTTCCATA 120038 |||| || | |||||||| Sbjct 16380809 GTTGCGCCGAGTTCCATA 16380792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517493049713640