Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27]
8,123 sequences; 165,709,965 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq104 147 2e-30
seq61 100 3e-16
>seq104
Length=21139217
Score = 147 bits (162), Expect = 2e-30
Identities = 367/550 (67%), Gaps = 12/550 (2%)
Strand=Plus/Minus
Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014
|||||||| || || ||||| || || |||||||| | |||||| ||||| ||
Sbjct 9083699 AACATCAGCACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAG 9083640
Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAAC--GACC 17072
|| |||| || ||||| || || ||||| | ||| || || | |||||| | |
Sbjct 9083639 AAGGTCAGTCCAGGCATAAGACCGCGCTTCTTAAGCCAGAAAATAGAGGCGAAGCTGCCG 9083580
Query 17073 CAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC-G 17131
| ||||| | || ||||| |||| ||||| ||||| | || || | | | || |
Sbjct 9083579 CTGAAAA--AGATGCCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCAAAATTGGCCG 9083522
Query 17132 TCTTTGTTACGAA-TCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATC--CATC 17188
||| | | ||| |||| | |||| || || || |||| | || | ||||
Sbjct 9083521 ACTTAG--AGGAAATCCAGGAAAGGGCCCAGTCTGCCTTGCGCTTCA--CAGCCGGCATC 9083466
Query 17189 GTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATG 17248
||||| || || || || | | |||| | || | || || || || |||||
Sbjct 9083465 GTTTCAATAGCGTTGAACAGGTACTCTCGCTGGTGCGGATCCCGGATGTAAGTGTCGATC 9083406
Query 17249 AGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCAT 17308
|| | |||||||| || ||||| | |||||||||||| |||||||| ||||| |||||
Sbjct 9083405 AGCACACTGTACATCTCCGAGTGCACGTTCTCCATGGCAATCTGAAAGCCGTAGAAGCAG 9083346
Query 17309 CGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATG 17368
|| || || | || || || ||| ||| |||||| | ||||| ||||| ||||||
Sbjct 9083345 CGTGCCTCTGTGATCTGCACCTCCTGACTGAAGCGTTCCACCAGATTCTCGTTTACGATG 9083286
Query 17369 CCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTA 17428
|| ||| |||||||| || |||| | ||| ||||||| ||||| |
Sbjct 9083285 CCATCGGAGGCGGCGAAGAAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTC 9083226
Query 17429 AGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTA 17488
|| | ||||||| | | || ||||| | |||||| || ||| |||||| |||
Sbjct 9083225 AGGCGGTGCCAGTCAGTAAGGTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAG 9083166
Query 17489 GCCACTGCCT 17498
||| | ||||
Sbjct 9083165 GCCTCAGCCT 9083156
>seq61
Length=22324452
Score = 100 bits (110), Expect = 3e-16
Identities = 180/258 (70%), Gaps = 4/258 (2%)
Strand=Plus/Minus
Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842
||||| || || | ||| ||||| | | || |||||||| | | || |||| ||
Sbjct 16381047 TTCATGTACCGAACCTTGCCGAAAATAGCCCGCTCCTTCCAACCCATATCATGGACGCCG 16380988
Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTT 119901
| | | ||| | ||| ||||| || ||||||||||| |||||| | ||| ||||||
Sbjct 16380987 CCAATTGACCACATGCAGCCCACATAGCCGTTGGGATCGCGTCCATCCAGACT-GTATTT 16380929
Query 119902 ATCGTTTAAGTAGATACAG-ACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTA 119960
||||| | ||| | || | ||||| || || || | |||||||||| |
Sbjct 16380928 GTCGTTCAGCAGGATCGCGTACTCC-AACGCCTCCTCTGGGGTTGCAGTCCATTCCAGAA 16380870
Query 119961 tttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAA 120020
| ||||| ||||||||||| || || | || |||||||| || || || |||| || |
Sbjct 16380869 TCTTTTTGGCCCAGTACATCCGCAAAAAGCCGTGCATTTTTCCCTCGCGCACCAGCTGCA 16380810
Query 120021 GTTGTGCGGCGTTCCATA 120038
|||| || | ||||||||
Sbjct 16380809 GTTGCGCCGAGTTCCATA 16380792
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517493049713640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |