Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq61 105 7e-18 >seq61 Length=22324452 Score = 105 bits (116), Expect = 7e-18 Identities = 182/259 (70%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995 |||||||| || | ||| || || | | ||||||||||| | | || |||| || Sbjct 16381047 TTCATGTACCGAACCTTGCCGAAAATAGCCCGCTCCTTCCAACCCATATCATGGACGCCG 16380988 Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACTT 119054 | | || ||| | || ||||| || ||||||||||| ||| || | ||| ||| || Sbjct 16380987 CCAATTGACCACATGCAGCCCACATAGCCGTTGGGATCGCGTCCATCCAGACT-GTATTT 16380929 Query 119055 ATCGTTTAAGTAGATACAG-ACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTA 119113 ||||| | ||| | || | ||||| || || || | |||||||||| | Sbjct 16380928 GTCGTTCAGCAGGATCGCGTACTCC-AACGCCTCCTCTGGGGTTGCAGTCCATTCCAGAA 16380870 Query 119114 tttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAA 119173 | ||||| ||||||||||| || ||| | ||||||||||| |||||| | || ||| | Sbjct 16380869 TCTTTTTGGCCCAGTACATCCGCAAAAAGCCGTGCATTTTTCCCTCGCGCACCAGCTGCA 16380810 Query 119174 GTTGTGCGGTGTTCCATAG 119192 |||| || | ||||||||| Sbjct 16380809 GTTGCGCCGAGTTCCATAG 16380791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511362472260360