Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq61 105 5e-18 >seq61 Length=22324452 Score = 105 bits (116), Expect = 5e-18 Identities = 282/429 (66%), Gaps = 8/429 (2%) Strand=Plus/Minus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || || || ||||| | ||||||||||||||| | ||||| || ||||| || | Sbjct 2962432 GGCGATCTGGGCCCGGTGTACGGCTTCCAGTGGCGGCATTTCGGGGCGGAGTACGCCACC 2962373 Query 18849 TGTCAATCAAACTATTTACAGCAAGG-AATCGATCAGCTGCAAACTGTTATAGATACAAT 18907 || | |||| | |||||| |||||||||||||| || || || || || Sbjct 2962372 TGCGACGACGACTACAG-CGGCAAGGGAATCGATCAGCTGCGCCAGGTGATCGACACCAT 2962314 Query 18908 TAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCC 18967 || | ||||| | || || || || || ||| |||||||||| ||||||||| Sbjct 2962313 CAAGAATAACCCCTCAGATCGGCGCATCATCATGTCGGCTTGGAATCCGCTGGATATCCC 2962254 Query 18968 CTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAA------CGG 19021 |||| || ||||| |||||| | ||||||||||| | | ||| Sbjct 2962253 GAAGATGGCCCTGCCTCCGTGTCACTGCCTGGCGCAGTTTTACGTCTCCCAGACGCGCGG 2962194 Query 19022 TGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAA 19081 ||| | || || || | |||||||| | ||||||||||| || || || ||||| Sbjct 2962193 TGAGCTGTCGTGTCAGCTCTACCAGAGGAGCGCCGATATGGGCCTGGGCGTGCCATTCAA 2962134 Query 19082 CATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGG 19141 ||| || ||||| || || ||| |||| | || ||||| || || || || | || Sbjct 2962133 CATCGCCTCCTATGCCCTGCTCACCCACATGATCGCCCATGTGACGGGTCTGAAGCCGGG 2962074 Query 19142 AGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAA 19201 || || | || || ||||| || | || | ||| |||| ||| | || | | || Sbjct 2962073 CGACTTTGTCCACACCATGGGCGACACGCACGTCTACCTGAACCATGTCGAGCCGCTGAA 2962014 Query 19202 AGTGCAGCT 19210 | |||||| Sbjct 2962013 GGAGCAGCT 2962005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399464449478535