Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq61 251 8e-62 >seq61 Length=22324452 Score = 251 bits (278), Expect = 8e-62 Identities = 540/799 (68%), Gaps = 36/799 (5%) Strand=Plus/Plus Query 145589 CAAAGTCCTCCGCCCTGAAGTCATCTATGTCCTCCACC---CGCCTCAGGATCCTGAGCC 145645 |||||||||| | ||| || || ||||||| |||| ||| | | |||| ||| Sbjct 2961922 CAAAGTCCTCGAAGCGGAAATCCTCGATGTCCTGCACCTGACGCTTAATGATC---AGCT 2961978 Query 145646 TGGGAAAGGGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGT 145705 |||||||||| || || | | |||||| |||||| ||||| || ||||| |||| Sbjct 2961979 TGGGAAAGGGTCGCGGTGTGCGCTGCAGCTGCTCCTTCAGCGGCTCGACATGGTTCAGGT 2962038 Query 145706 AGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGG 145765 ||||||||| ||| |||| | ||||| ||||| || |||| || ||||| | |||| Sbjct 2962039 AGACGTGCGTGTCGCCCATGGTGTGGACAAAGTCGCCCGGCTTCAGACCCGTCACATGGG 2962098 Query 145766 CGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGT 145825 ||| ||||| ||| ||||||| ||| ||| |||||||| ||||| ||||| ||||| | Sbjct 2962099 CGATCATGTGGGTGAGCAGGGCATAGGAGGCGATGTTGAATGGCACGCCCAGGCCCATAT 2962158 Query 145826 CCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC------ACGTAGAACT 145879 | | | |||||| ||||| || || ||||| |||| || | ||||| |||| Sbjct 2962159 CGGCGCTCCTCTGGTAGAGCTGACACGACAGCTCACCGCGCGTCTGGGAGACGTAAAACT 2962218 Query 145880 GGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGG 145939 | |||| ||| || || ||||||||||| || | ||| ||| ||||| || | Sbjct 2962219 GCGCCAGGCAGTGACACGGAGGCAGGGCCATCTTCGGGATATCCAGCGGATTCCAAGCCG 2962278 Query 145940 TGAGGACGAGCCTCCTGCTCT-CGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGC 145998 | || || | || | ||| |||||| ||||||| | |||| | | ||| Sbjct 2962279 ACATGATGATGCGCC-GATCTGAGGGGTTATTCTTGATGGTGTCGATCACCTGGCGCAGC 2962337 Query 145999 TGGTCCACGCCCTGCCCCCGGTAATCTGTC-TTGGAGTCCACGTACGCGGCCCCGAAGTG 146057 || || | |||| || | ||| || ||| | | || ||||| | |||||||| || Sbjct 2962338 TGATCGATTCCCTTGCCGCTGTAGTC-GTCGTCGCAGGTGGCGTACTCCGCCCCGAAATG 2962396 Query 146058 CCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCC------CGGGCTCCCTGTGCCCCAG 146111 || ||||||||| ||||| || || ||||| || | || | ||| || |||||| Sbjct 2962397 CCGCCACTGGAAGCCGTACACCGGGCCCAGATCGCCAACTGCGCGTTCCGTGAACCCCAG 2962456 Query 146112 CCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGC 146171 | | || || || || | || | ||| |||||||||| | ||| | |||| Sbjct 2962457 CTTGTCC------AGAAACTCTCTGGTGCTGTTCCCGTCCCAGATGTGCACGTTCTTCGC 2962510 Query 146172 GGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCC 146231 ||| |||| |||||| ||| | |||||| |||||||| ||| || | Sbjct 2962511 CTGCAGCAACTTGGCGTCCGTCTTGCCCGCCACGAACCACAGCAGCTCCTCGGCCACAGC 2962570 Query 146232 CCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGG---GAACTGGCCCCGCAGGGAGTAC-T 146287 | ||||||||| ||||||||||||||| || | |||| | | | || | | Sbjct 2962571 GCGGAAGAAGACCCGCTTGGTGGTCAGCAGTGGAAAGGACTGTCGCATGTCGAAGCGCAT 2962630 Query 146288 TGGCCTGGTCCCCGAAGACGGACAGGGTGCCCACGCCCGTCCTGTCCCCCCTGCGCACCC 146347 | | ||| ||||| | |||||| |||||||| ||| | |||| || || ||| Sbjct 2962631 TTGACTG----CCGAACAAGGACAGCGTGCCCACCTGCGTGCGGTCCATCCGCTGCTCCC 2962686 Query 146348 CGTTCGCCAGGATCTCCCT 146366 | || || | ||||| ||| Sbjct 2962687 CATTGGCGATGATCTGCCT 2962705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590016885076920