Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq61 125 6e-24 seq119 107 2e-18 seq67 102 7e-17 seq5 89.7 4e-13 seq1 89.7 4e-13 >seq61 Length=22324452 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| || | ||||||||||| || ||||| ||||| | | Sbjct 4253769 CCACCACGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 4253710 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||||||||| ||||| || | || || | |||||| || ||| Sbjct 4253709 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 4253650 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| ||||| || |||||| || || | ||| || ||| |||||| Sbjct 4253649 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACC 4253590 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||||||||| | ||||| || || |||||||| Sbjct 4253589 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 4253543 Score = 102 bits (112), Expect = 7e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| |||||||||||| |||||||||||||| | Sbjct 13090700 CCACCACGCAGGCGCAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAG 13090641 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| || | || || | |||||| || || Sbjct 13090640 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 13090581 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| ||||| ||| || | ||| |||||| || || Sbjct 13090580 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACC 13090521 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAAT 21182 || | || ||||||||||| || | || || || || || ||||| ||| || Sbjct 13090520 TCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGTAT 13090467 >seq119 Length=24197627 Score = 107 bits (118), Expect = 2e-18 Identities = 228/336 (68%), Gaps = 11/336 (3%) Strand=Plus/Plus Query 23617 CCAATGATGCCGCAGCCCAGCCGGCCGCCAGAATTGCCCGTGGTCTTGCTGAGCGGGTGC 23676 ||||| | ||||||||| | ||| | |||| |||||||| | |||||| ||| ||| Sbjct 11133747 CCAATAACGCCGCAGCCAATGCGGGCACCAGCGTTGCCCGTTGACTTGCTCAGCTCGTGG 11133806 Query 23677 TCGCCGAGGCCCAGGTCATCGCGGTCCGTGTGCACGACCAGGCTGCGGCCCAATATACTC 23736 | || ||| || |||||| || | ||||||||| | | |||| || | || || Sbjct 11133807 CCACCCTTGCCGAGATCATCGGCATCGGCGTGCACGACAACGGTGCGTCCAATGATGCTG 11133866 Query 23737 AACGGC-CCAAACAGGGTTATCACGTTGTCGCTCATGTGTATGGCCGTGAGTGCGGTGCA 23795 |||| || || || || ||| | |||| | ||| || || || | || ||| Sbjct 11133867 T-CGGCGCCGAAGAGCGTGATCTTGGAGTCGGTGATGC---TGACCTTG---GTGGGGCA 11133919 Query 23796 GCCCGCAGAGCGCAC---GTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGC 23852 | | | | | | | |||||||| || || | ||| || | | || |||| || Sbjct 11133920 GTCGCCGGTGGCCTCAATGTTGCCCAAATCCCCCAAGTGGCGGTTGTCATCGACGGGAGC 11133979 Query 23853 GCCGTGTCTCTGGCGGGTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGT 23912 |||||| || || ||| || |||||| || | ||| ||||||||||| || | Sbjct 11133980 GCCGTGCTCCTTGCCATAGGGATTGAAGTGCGGTCCGGACGACATGCAGCCGTTGGTGTT 11134039 Query 23913 GTCGCCGAATTCGTGCACGTGAAAACCGTGCAGCCC 23948 ||||||||| ||||||||||| || |||||||| || Sbjct 11134040 GTCGCCGAACTCGTGCACGTGGAATCCGTGCAGACC 11134075 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | |||||||| |||||||| |||||||| || ||||| || || | Sbjct 4458665 TTCCTCCGCGGAGACGGAGCACCAAGTGCAAAGTTGACTCCTTCTGGATGTTGTAATCAG 4458724 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || || | | ||||| ||||||||||| || | || || | |||||| || | Sbjct 4458725 AAAGAGTGCGTCCATCCTCTAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAG 4458784 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || |||||||| |||||| ||||| | | | || || ||||| Sbjct 4458785 GAATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGAAGGCTCAA 4458844 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| ||| |||||||| ||||| || || || || || || ||||| Sbjct 4458845 CTTCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 4458893 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| |||| || | || |||||||| || ||||| ||||| | Sbjct 4458895 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 4458954 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||| ||||||||||| || | || || | |||||| || || Sbjct 4458955 AGAGTGCGTCCATCCTCGAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGA 4459014 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | | | || || ||||| | Sbjct 4459015 ATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGATGGCTCAACT 4459074 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||| ||||| || || || || || || ||||| Sbjct 4459075 TCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 4459121 >seq67 Length=2158 Score = 102 bits (112), Expect = 7e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| |||||||||||| |||||||||||||| | Sbjct 1167 CCACCACGCAGGCGCAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAG 1108 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| || | || || | |||||| || || Sbjct 1107 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 1048 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| ||||| ||| || | ||| |||||| || || Sbjct 1047 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACC 988 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAAT 21182 || | || ||||||||||| || | || || || || || ||||| ||| || Sbjct 987 TCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGTAT 934 >seq5 Length=900 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | ||||||||||| || ||||| ||||| | | Sbjct 392 CCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 333 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | |||| |||||||| || || || | || | | |||||| || ||| Sbjct 332 AGGGTGCGTCCGTCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 273 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | ||| ||||| ||||| Sbjct 272 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACC 213 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||||||||| | || || || || || ||||| Sbjct 212 TCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 166 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | ||||||||||| || ||||| ||||| | | Sbjct 620 CCACCACGCAGACGCAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 561 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | |||| |||||||| || || || | || | | |||||| || ||| Sbjct 560 AGGGTGCGTCCGTCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 501 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | ||| ||||| ||||| Sbjct 500 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACC 441 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||||||||| | || || || || || ||||| Sbjct 440 TCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 394 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | ||||||||||| || ||||| ||||| | | Sbjct 848 CCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 789 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | |||| |||||||| || || || | || | | |||||| || ||| Sbjct 788 AGGGTGCGTCCGTCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 729 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | ||| ||||| ||||| Sbjct 728 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACC 669 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||||||||| | || || || || || ||||| Sbjct 668 TCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 622 >seq1 Length=21770863 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | ||||||||||| || ||||| ||||| | | Sbjct 2175624 CCACCACGCAGACGCAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2175683 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | |||| |||||||| || || || | || | | |||||| || ||| Sbjct 2175684 AGGGTGCGTCCGTCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 2175743 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | ||| ||||| ||||| Sbjct 2175744 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACC 2175803 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||||||||| | || || || || || ||||| Sbjct 2175804 TCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 2175850 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | ||||||||||| || ||||| ||||| | | Sbjct 2175852 CCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 2175911 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | |||| |||||||| || || || | || | | |||||| || ||| Sbjct 2175912 AGGGTGCGTCCGTCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 2175971 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | ||| ||||| ||||| Sbjct 2175972 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACC 2176031 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||||||||| | || || || || || ||||| Sbjct 2176032 TCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 2176078 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | ||||||||||| || || || ||||| | | Sbjct 2176080 CCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGAC 2176139 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||||| ||| || || || | || | | |||||| || ||| Sbjct 2176140 AGGGTGCGTCCGTCCTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 2176199 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | ||| ||||| ||||| Sbjct 2176200 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACC 2176259 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 |||| || ||||||||||| || | || || || || |||||||| ||| Sbjct 2176260 TCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAAATTTGCATATTG 2176310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422217396735068