Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq61 125 1e-23 >seq61 Length=22324452 Score = 125 bits (138), Expect = 1e-23 Identities = 202/288 (70%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 189449 CTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGA 189508 ||||||||| || | ||| ||||| ||||| | || ||||||||||| | ||||| || Sbjct 16380791 CTATGGAACTCGGCGCAACTGCAGCTGGTGCGCGAGGGAAAAATGCACGGCTTTTTGCGG 16380850 Query 189509 ATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTAT 189568 ||||| ||||| || ||||| || ||||||||| ||| || || || || ||| || Sbjct 16380851 ATGTACTGGGCCAAAAAGATTCTGGAATGGACTGCAACCCCAGAGGAGGCGTTGGAGTAC 16380910 Query 189569 AGTATCTATTTGAACAACAAGTACGAACTAGACGGCACG-GATCCTAACGGATACGTAGG 189627 ||| ||||| |||| ||| || || || ||| ||||| ||||| || || || Sbjct 16380911 GCGATCCTGCTGAACGACAAATACAGTCTGGATGG-ACGCGATCCCAACGGCTATGTGGG 16380969 Query 189628 TTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATATTTGG 189687 || |||||||| ||| |||| | || |||| | ||||| || | | || || || Sbjct 16380970 CTGCATGTGGTCAATTGGCGGCGTCCATGATATGGGTTGGAAGGAGCGGGCTATTTTCGG 16381029 Query 189688 AAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGT 189735 ||| | | || ||||| ||| || | | || ||||| ||||| Sbjct 16381030 CAAGGTTCGGTACATGAACTATCAGGGATGCAAACGCAAATTCGATGT 16381077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923103060904920