Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq61 89.7 1e-12 >seq61 Length=22324452 Score = 89.7 bits (98), Expect = 1e-12 Identities = 467/732 (64%), Gaps = 29/732 (4%) Strand=Plus/Minus Query 249277 TTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAG 249336 || ||||| || ||||| |||||| | ||| | || ||||||||||| |||| || Sbjct 13005438 TTTGCCATTTACCTGGAACCTTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAA 13005379 Query 249337 AACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGAC 249396 |||| ||||| || | | || || || ||||| |||| ||||||| | |||| Sbjct 13005378 AACACTGGCAAGGAAGAGAATCGCGCCCGCGATCTCTTTTACGCCCTGTGGATACCCGAT 13005319 Query 249397 TTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCT-TTCTCCGTCCGACGC 249455 | |||||| ||||| ||||| | ||||||||| |||| | | | || | | || Sbjct 13005318 CTCTTCATGAAACGCGTGGAGGCCAATGGCGATTGGTCGCTCATGTGCCCCCACAAATGC 13005259 Query 249456 CCCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGC-CTATAAGAAATACGAAT 249514 || || |||| ||| | |||| || ||||| |||| ||| |||||||||| Sbjct 13005258 CCTGG-CCTCCAAGATGTGTGGGGCGATGAATTCGA-AAAGCTGTATGAGAAATACGAGC 13005201 Query 249515 CCAACGGCATCGGCAA---GACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGG 249568 | || | ||| || | ||||||| |||| ||||| | | | | Sbjct 13005200 AGGAGGGTCGTGCCAACCGAACGGTTAAGGCTCAATCCCTGTGGTTTGCCA---TCATTG 13005144 Query 249569 AGTCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCAAGA 249628 || | || | || || || ||||| | ||||| |||||||||||| |||| Sbjct 13005143 AGGCGCAAGTGGAAACTGGAAATCCGTACATGCTCTTCAAGGACGCGTGCAACAGGAAGA 13005084 Query 249629 GTAACCAACGGCATCTTGGTACCATC-CGCTCGTCAAATCTCTGTGCA--GAGGTGATTC 249685 | || || | | || |||| |||||| | | ||| | |||||| || | || Sbjct 13005083 GCAATCAGCAGAATGTTGGCACCATCAAGTGCAGCAACT---TGTGCACGGAAATCGTTG 13005027 Query 249686 AATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGCAAGCATCAATCTCGTGAGGC 249745 ||||||| | ||| ||||| || ||||||||||| ||| |||| ||| | | Sbjct 13005026 AATACTCCGCGCCGGATGAGATAGCAGTCTGCAACCTTGCATCCATCGCCCTCAACATGT 13004967 Query 249746 ACGTGAGGGCGGACAGGACGTTCGACTTCGAGCGTCTTCACCGGACG--GCGAAACAGGC 249803 || | |||| | ||||| || ||| || || | ||| | | || | Sbjct 13004966 TTGTCACACCGGAGAAGACGTATGATTTCAAGAAGCT--AAAGGAAGTCACCAAGATAGT 13004909 Query 249804 GATCAAAAACCTCAACAAGGTGATTGATGTCAATTTTTACCCCCT---TGAGGAATGCAG 249860 | ||||| || |||||| | |||||| |||| | ||| ||||| |||| | | Sbjct 13004908 TACAAAAAATCTTAACAAGATTATTGATATCAACTATTATCCCCTGCCAGAGGCA---AA 13004852 Query 249861 GTTGTCCAACATGAAGCACCGTCCATGTGGGCTGGGCGTTCAGGCACTGCACGACGTCTA 249920 | |||||| ||| ||||||||| ||| | || ||||||| | | |||| Sbjct 13004851 GAAGTCCAATTTGAGGCACCGTCCCGTTGGCATTGGTGTTCAGGGATTCGCTGACGCGCT 13004792 Query 249921 CATGGTGATGGGATTCCCCTTCGAGTCAGAGGAGGCAGCGACGCTAAATAAACAGATTTT 249980 || | ||| ||||||| | ||| || || || | | | ||| | |||||||| Sbjct 13004791 GATCCTCATGCGATTCCCATATGAGAGTGAAGAAGCCGGTCTGTTGAATCAGCAGATTTT 13004732 Query 249981 CGAGACCATCTA 249992 ||| ||||| || Sbjct 13004731 CGAAACCATTTA 13004720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073654646755264