Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq104 132 1e-25 >seq104 Length=21139217 Score = 132 bits (146), Expect = 1e-25 Identities = 295/438 (67%), Gaps = 5/438 (1%) Strand=Plus/Plus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 |||||||| || || || || ||||| || || || ||||| || ||||||||| | Sbjct 9083548 GCCTTTGCCGCCGTGGAGGGCATCTTTTTCAGCGGCAGCTTCGCCTCTATTTTCTGGCTT 9083607 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 ||||| | ||| || ||||||| || |||| |||||| ||| | || ||| | ||||| Sbjct 9083608 AAGAAGCGCGGTCTTATGCCTGGACTGACCTTCTCCAACGAGCTTATCTCTCGCGACGAG 9083667 Query 102041 GGTCTTCATCGCGACTTTGCA-TGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCATC 102099 || | || |||||||||| ||| || |||| | | | || | |||| | | Sbjct 9083668 GGCTTGCACTGCGACTTTGCCGTGC-TGATGTTCCAGCACC-TGGTGCAGCGACCCAAGC 9083725 Query 102100 AAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCAC 102159 ||| | || | || || || || || || ||||| || ||||| ||||| Sbjct 9083726 GCGAGC--GCATCATCGAGATCATCCGCGACGCAGTGGCGATTGAGCAGGAATTCCTCAC 9083783 Query 102160 AGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTGA 102219 | | ||||||||||||| ||| | || ||||| || | ||||| ||||||||| || Sbjct 9083784 CGATGCCCTGCCTGTTAATTTAATCGGCATGAATTGTGACCTGATGTCCCAGTACATAGA 9083843 Query 102220 ATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTACCAA 102279 || ||||| ||| | | || || |||| | | ||| ||| || | || Sbjct 9083844 GTTCGTGGCGGATCGTTTGCTTGTGGAGTTGGGCGTTGGGAAGATCTACAACACCAAGAA 9083903 Query 102280 CCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAGAG 102339 ||||||| |||||||| | || || || || ||||||||||||||||| || | Sbjct 9083904 CCCCTTCAACTTCATGGAGATGATATCGCTGGATGGAAAGACCAACTTTTTTGAGAAAAA 9083963 Query 102340 AGTCGCCGAGTATCAACG 102357 || | ||||| || || Sbjct 9083964 GGTGGGAGAGTACCAGCG 9083981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989481008117465