Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq61 288 1e-72 seq104 183 4e-41 >seq61 Length=22324452 Score = 288 bits (318), Expect = 1e-72 Identities = 1193/1869 (64%), Gaps = 24/1869 (1%) Strand=Plus/Plus Query 62036 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62095 ||||| || ||||| ||||||| | | || || || || || |||||||||||||| Sbjct 13004065 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTGCGCAGATAGTACATTCC 13004124 Query 62096 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62155 ||||| ||||| |||| ||| || || || || ||||| || | || Sbjct 13004125 GGTTTTGAGACCAGCTTTCCAGGAGTAGAAGTGTATGGAGGTCAGTTTTCCGTAGTTTGG 13004184 Query 62156 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62215 ||||| | ||| || || | || ||||| ||||| |||||||| || | || || || Sbjct 13004185 CTCTGCCACATGAATGTTGAATGACTGACTCTGATCTATGAAGGCACCACGATCGGCGGC 13004244 Query 62216 CATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 62274 |||||| || | | ||| || |||||||| | || || || | |||| | | Sbjct 13004245 CATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTAGAGATCGCGAACCTT 13004304 Query 62275 CTTCTGGAAGGTTTGTAT--TCTGAATGGATCCACCATCTACC-ATAATCCTATTCTTGA 62331 || ||| || | || | || || || || || || || ||| ||||| | Sbjct 13004305 CTGGGGGATGGCCTCGATGTTTTGGATTGAGCC-CCGGCTGGATATGATCTGGTTCTTCA 13004363 Query 62332 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTT 62391 | || || | ||| || | |||||||| | | || | ||| |||| || || | Sbjct 13004364 TGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAGCAAATGATGGTTGACCACCT 13004423 Query 62392 GGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACT 62451 | ||||| || |||| |||| || ||||| || || ||||||| || || | || | Sbjct 13004424 GAAATTCGCCGGACAGAACTCGCCTGGTGTATATGTTCGTGGTATAGGGCTCGAAGGATT 13004483 Query 62452 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62511 |||| || |||| ||| ||||| || || ||||| ||||| || || |||| | | Sbjct 13004484 CATTGTTGCCCATAATCTGAGCTGTGGAAGCAGTGGGCATCGGAGCAACCAGCAGGGAGT 13004543 Query 62512 TTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGAC 62570 | | | |||| || | |||| || || || | | ||| | ||| || | || Sbjct 13004544 TCCGGACGCCGTGCTGCT-TGATGGACTCCTTCAGTTTCTGCCAGTCCCAGAGGTTCGTT 13004602 Query 62571 GGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 62629 || || || || | ||| || || || | | | ||| | || Sbjct 13004603 GGGACCTTGTCCCACATGTCGTACTGCAAAATTCCCTTGCTCACCGGGCTGCCCT-CGTA 13004661 Query 62630 TGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATA 62689 || || ||||| || || || || |||| ||| || || || || || || || || Sbjct 13004662 GGTTTCGTATGGACCCTCAGCCTGGGCCAGTTCACAGCTGGCTTCCAAGGCGCCATAGTA 13004721 Query 62690 AATGGTTTCAAAGATCTTCTTATTTA---GATCTTGTGCTTCCGGGCTATCAAATGGATA 62746 ||||||||| || |||| || ||| | || | | |||| || ||| |||| | Sbjct 13004722 AATGGTTTCGAAAATCTGCTGATTCAACAGACCGGCTTCTTCA---CTCTCATATGGGAA 13004778 Query 62747 ATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62806 | ||| || | |||||| || ||||| ||||||||||| || | || | || || Sbjct 13004779 TCGCATGAGGATCAGCGCGTCAGCGAATCCCTGAACACCAATGCCAACGGGACGGTGCCT 13004838 Query 62807 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 62866 | ||| || | | || ||||| | |||||||| || ||||| ||||| || || || Sbjct 13004839 CAAATTGGACTTCTTTGCCTCTGGCAGGGGATAATAGTTGATATCAATAATCTTGTTAAG 13004898 Query 62867 ATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC--- 62923 |||| | || || ||| || ||||| || || |||||| | | || Sbjct 13004899 ATTTTTTGTAACTATCTTGGTGACTTCCTTTAGCTTCTTGAAATCATACGTCTTCTCCGG 13004958 Query 62924 TATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATC 62983 | | ||||||||||| | || | ||||| || || || || |||| ||||| | | Sbjct 13004959 TGTGACAAACATGTTGAGGGCGATGGATGCAAGGTTGCAGACTGCTATCTCATCCGGCGC 13005018 Query 62984 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTG 63043 | |||| | || || ||||| | || || |||||||| || || | ||| || || Sbjct 13005019 GGAGTATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCAACATTCTGCTG 13005078 Query 63044 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 63103 ||| ||||| |||| ||||| ||||| | || ||| | ||| | |||||||| | || Sbjct 13005079 ATTGCTCTTCCTGTTGCACGCGTCCTTGAAGAGCATGTACGGATTTCCAGTTTCCACTTG 13005138 Query 63104 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA-TTATAGATTTGTATCTCCTTT 63162 | || || || || ||| | | | ||||||| | | | || | | || | Sbjct 13005139 CGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGGCACGACCCTC 13005198 Query 63163 CTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAG 63222 || |||||| ||||| |||||| || || ||||| |||| | | | || Sbjct 13005199 CT-GCTCGTATTTCTCATACAGCTTTTCGAATTCATCGCCCCACACATCTTGGAGGCCAG 13005257 Query 63223 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63282 | |||| | || ||||| | |||||| || || | ||| ||| |||||||| |||| Sbjct 13005258 GGCATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCTCCACGCGTTTCATGAAGA 13005317 Query 63283 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTAT 63342 |||| || ||||| || || ||| ||||| | | | || || || || || || | Sbjct 13005318 GATCGGGTATCCACAGGGCGTAAAAGAGATCGCGGGCGCGATTCTCTTCCTTGCCAGTGT 13005377 Query 63343 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63402 | || || || || |||||| | | | ||| || ||||| ||||||| ||| ||||| | Sbjct 13005378 TTTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAAGGTTCCAGGTAAATGGCAA 13005437 Query 63403 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63462 | || || || ||| ||||||||||| | || | || || || | || | Sbjct 13005438 AGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGCGCCACATTGTTGAAGACCC 13005497 Query 63463 TCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGG 63522 ||| ||| |||| | || || || | || || || || | || || || | | Sbjct 13005498 TCAGCATGGGAACCAACCCATTGGACGTTCCGTTTGTGCCACAAATGGAGGTGCCCTTTG 13005557 Query 63523 CACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63580 ||||||| | | | ||| || || || || || || || ||||| | ||||| Sbjct 13005558 CACGAATGCAATGCACGTTG--AGGCCGATGCCACCAGCAGACTTGGAGATCATAGCGCA 13005615 Query 63581 TCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACA 63640 | | | | | | ||||| || ||| || | ||||| | || || ||||| Sbjct 13005616 CTGCTCCACAGACTTGAATATGCCCTCGATGGAGTCGGCAGTCATGGTCAGCAGGAAACA 13005675 Query 63641 GCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700 |||| || |||| | || | || ||| | || || || || ||||| || Sbjct 13005676 CGACGACAGCTGCGGACGGTTTGTGGCAGCGGCAAACAGCGTGGGCGATGCATGCGTGAA 13005735 Query 63701 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63760 | || || || |||||||| || || | || | || || ||| | ||| || Sbjct 13005736 GTAGCGCTCCGAGAGGAGATTGTAGGTTTCCACGGCCGCATCAATGTCCTCTCCATGGAT 13005795 Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTT 63820 ||| | || || ||||| | ||||||||| |||| || | || || |||| | || Sbjct 13005796 TCCGATCGCCACGCGCATCAGCATGTGCTGTGGTCGCTCGGCGATCTTTCCGTTTCTCTT 13005855 Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880 | || ||||| |||| || ||||| ||||||||||| || |||||| || || Sbjct 13005856 GAGCAGATAGGAGCGCTCCAGGGTCTTAAAGCCAAAATAGTTATAGCCAAAGTCACGATC 13005915 Query 63881 GTAAATAAT 63889 || || || Sbjct 13005916 ATAGATTAT 13005924 >seq104 Length=21139217 Score = 183 bits (202), Expect = 4e-41 Identities = 543/835 (65%), Gaps = 3/835 (0%) Strand=Plus/Minus Query 33282 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33341 |||||||| ||||| || ||||| ||| || ||||| || || ||||| |||| Sbjct 9083990 ACTCCCATGCGCTGGTACTCTCCCACCTTTTTCTCAAAAAAGTTGGTCTTTCCATCCAGC 9083931 Query 33342 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAAT 33401 ||||| | |||||||| | || || || | ||||| || || || ||||| Sbjct 9083930 GATATCATCTCCATGAAGTTGAAGGGGTTCTTGGTGTTGTAGATCTTCCCAACGCCCAAC 9083871 Query 33402 TCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33461 || || ||| | ||| || ||||| ||||| || ||||| ||||||||||| Sbjct 9083870 TCCACAAGCAAACGATCCGCCACGAACTCTATGTACTGGGACATCAGGTCACAATTCATG 9083811 Query 33462 CCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTT 33521 || || | ||||| || || || | || || ||||| || ||||| | || || | Sbjct 9083810 CCGATTAAATTAACAGGCAGGGCATCGGTGAGGAATTCCTGCTCAATCGCCACTGCGTCG 9083751 Query 33522 GTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAA 33581 || || | | | || | ||| | || | | || | ||||||| Sbjct 9083750 CGGATGATCTCGATGATGCGCTCGCGCTTGGGTCGCTGCACCAGGTGCTGGAACATCAGC 9083691 Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || |||||||||| |||||||| | | || | ||||| || || || ||| Sbjct 9083690 ACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGTCAGT 9083631 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || ||||| |||||||| || || || ||||| ||| || ||| Sbjct 9083630 CCAGGCATAAGACCGCGCTTCTTAAGCCAGAAAATAGAGGCGAAGCTGCCGCTGAAAAAG 9083571 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--GCTGTCATG-T 33758 || || || || || |||||||| || | | ||| ||| || ||| || | | Sbjct 9083570 ATGCCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCAAAATTGGCCGACTTAGAGGAA 9083511 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| | ||||| || ||||| || ||| ||||||||||| || || || Sbjct 9083510 ATCCAGGAAAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCAATAGCGTTG 9083451 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 || || || | | | | ||| | ||||| ||||||| | ||| ||||| Sbjct 9083450 AACAGGTACTCTCGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATC 9083391 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 ||||| || | ||| || ||||| |||||||| |||||||| || | ||||| || ||| Sbjct 9083390 TCCGAGTGCACGTTCTCCATGGCAATCTGAAAGCCGTAGAAGCAGCGTGCCTCTGTGATC 9083331 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 ||||| || || || ||||| | | ||| || || || || ||||| ||| || Sbjct 9083330 TGCACCTCCTGACTGAAGCGTTCCACCAGATTCTCGTTTACGATGCCATCGGAGGCGGCG 9083271 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCA 34058 || || |||| || || || |||| ||||| | || | ||| ||| Sbjct 9083270 AAGAAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCA 9083211 Query 34059 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | | || || || | |||||| || || || ||||| || || ||||| |||| Sbjct 9083210 GTAAGGTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAGGCCTCAGCCT 9083156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629753649895440