Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq61 102 8e-17 >seq61 Length=22324452 Score = 102 bits (112), Expect = 8e-17 Identities = 317/491 (65%), Gaps = 0/491 (0%) Strand=Plus/Plus Query 37132 TTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGT 37191 || || |||||||| || || || | |||| || || ||||| || | ||||| || Sbjct 13004414 TTGACCACCTGAAATTCGCCGGACAGAACTCGCCTGGTGTATATGTTCGTGGTATAGGGC 13004473 Query 37192 TCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATT 37251 || | ||| ||||| || | | || |||| ||| || ||||| ||||| || || | Sbjct 13004474 TCGAAGGATTCATTGTTGCCCATAATCTGAGCTGTGGAAGCAGTGGGCATCGGAGCAACC 13004533 Query 37252 AGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCAT 37311 || ||| || | | || || || || || || |||| | ||| ||||| Sbjct 13004534 AGCAGGGAGTTCCGGACGCCGTGCTGCTTGATGGACTCCTTCAGTTTCTGCCAGTCCCAG 13004593 Query 37312 AAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAA 37371 | | |||||| ||| |||||| || || || | ||| || || ||| | || Sbjct 13004594 AGGTTCGTTGGGACCTTGTCCCACATGTCGTACTGCAAAATTCCCTTGCTCACCGGGCTG 13004653 Query 37372 TCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCG 37431 | | || || || || || || | | | || ||||| || || | ||| | ||| Sbjct 13004654 CCCTCGTAGGTTTCGTATGGACCCTCAGCCTGGGCCAGTTCACAGCTGGCTTCCAAGGCG 13004713 Query 37432 GCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAAT 37491 |||| || || ||||||||||| || ||| || | |||||||| || || || Sbjct 13004714 CCATAGTAAATGGTTTCGAAAATCTGCTGATTCAACAGACCGGCTTCTTCACTCTCATAT 13004773 Query 37492 GCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTA 37551 | | | || | || | | | ||||| || ||||||||||| || || | ||| | Sbjct 13004774 GGGAATCGCATGAGGATCAGCGCGTCAGCGAATCCCTGAACACCAATGCCAACGGGACGG 13004833 Query 37552 TGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTA 37611 || || ||| || | | ||| || |||||||| |||||||| || || || Sbjct 13004834 TGCCTCAAATTGGACTTCTTTGCCTCTGGCAGGGGATAATAGTTGATATCAATAATCTTG 13004893 Query 37612 TTTAGATTTTT 37622 || |||||||| Sbjct 13004894 TTAAGATTTTT 13004904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468477227163120