Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq61 331 1e-85 >seq61 Length=22324452 Score = 331 bits (366), Expect = 1e-85 Identities = 1202/1869 (64%), Gaps = 24/1869 (1%) Strand=Plus/Plus Query 64829 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 64888 ||||| || ||||| ||||||| | | || || || || || |||||||||||||| Sbjct 13004065 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTGCGCAGATAGTACATTCC 13004124 Query 64889 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 64948 ||||| ||||| |||| ||| || || || || ||||| || | || Sbjct 13004125 GGTTTTGAGACCAGCTTTCCAGGAGTAGAAGTGTATGGAGGTCAGTTTTCCGTAGTTTGG 13004184 Query 64949 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 65008 ||||| | ||| || || | || ||||| ||||| |||||||| || | || || || Sbjct 13004185 CTCTGCCACATGAATGTTGAATGACTGACTCTGATCTATGAAGGCACCACGATCGGCGGC 13004244 Query 65009 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 65067 |||||| || | | ||| || |||||||| | || || || | |||| | | Sbjct 13004245 CATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTAGAGATCGCGAACCTT 13004304 Query 65068 CTTCTGGAAGGTTTGTAT--TCTGAATGGATCCACCATCTGCC-ATAATCCTATTCTTGA 65124 || ||| || | || | || || || || || ||| || ||| ||||| | Sbjct 13004305 CTGGGGGATGGCCTCGATGTTTTGGATTGAGCC-CCGGCTGGATATGATCTGGTTCTTCA 13004363 Query 65125 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 65184 | || || | ||| || | |||||||| | | || | ||| | || || || | Sbjct 13004364 TGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAGCAAATGATGGTTGACCACCT 13004423 Query 65185 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 65244 ||||||| || |||| |||| || ||||| || || ||||||| || || | || | Sbjct 13004424 GAAATTCGCCGGACAGAACTCGCCTGGTGTATATGTTCGTGGTATAGGGCTCGAAGGATT 13004483 Query 65245 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 65304 |||| || |||| ||| ||||| || || ||||| ||||| || || |||| | | Sbjct 13004484 CATTGTTGCCCATAATCTGAGCTGTGGAAGCAGTGGGCATCGGAGCAACCAGCAGGGAGT 13004543 Query 65305 TTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 65363 | | | |||| || | |||| || || || | ||| | ||| || | || Sbjct 13004544 TCCGGACGCCGTGCTGCT-TGATGGACTCCTTCAGTTTCTGCCAGTCCCAGAGGTTCGTT 13004602 Query 65364 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 65422 || || || | ||| || || || | | | ||| | || Sbjct 13004603 GGGACCTTGTCCCACATGTCGTACTGCAAAATTCCCTTGCTCACCGGGCTGCCCT-CGTA 13004661 Query 65423 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 65482 || |||||||| || || || || |||||||| || || || || || || || || Sbjct 13004662 GGTTTCGTATGGACCCTCAGCCTGGGCCAGTTCACAGCTGGCTTCCAAGGCGCCATAGTA 13004721 Query 65483 AATGGTTTCGAAGATCTTCTTATTTA---GATCTTGTGCTTCCAGGCTATCAAATGGATA 65539 |||||||||||| |||| || ||| | || | | |||| || ||| |||| | Sbjct 13004722 AATGGTTTCGAAAATCTGCTGATTCAACAGACCGGCTTCTTCA---CTCTCATATGGGAA 13004778 Query 65540 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 65599 | ||| || | |||||| || ||||| ||||||||||| || | || | || || Sbjct 13004779 TCGCATGAGGATCAGCGCGTCAGCGAATCCCTGAACACCAATGCCAACGGGACGGTGCCT 13004838 Query 65600 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 65659 | ||| || | | || ||||| | |||||||| || ||||| ||||| || || || Sbjct 13004839 CAAATTGGACTTCTTTGCCTCTGGCAGGGGATAATAGTTGATATCAATAATCTTGTTAAG 13004898 Query 65660 ATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATC--- 65716 |||| | || || ||| || ||||| || || |||||| | || || Sbjct 13004899 ATTTTTTGTAACTATCTTGGTGACTTCCTTTAGCTTCTTGAAATCATACGTCTTCTCCGG 13004958 Query 65717 TATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC 65776 | | ||||||||||| | || | ||||| || || || || |||| ||||| | | Sbjct 13004959 TGTGACAAACATGTTGAGGGCGATGGATGCAAGGTTGCAGACTGCTATCTCATCCGGCGC 13005018 Query 65777 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 65836 | |||| | || || ||||| | || || ||||||||||| || | ||| || || Sbjct 13005019 GGAGTATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCAACATTCTGCTG 13005078 Query 65837 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 65896 ||| ||||| |||| ||||| ||||| | || ||| | ||| | |||||||| | || Sbjct 13005079 ATTGCTCTTCCTGTTGCACGCGTCCTTGAAGAGCATGTACGGATTTCCAGTTTCCACTTG 13005138 Query 65897 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA-TTATAGATTTGTATCTCTTTT 65955 | || || || || ||| | | | ||||||| | | | || | | | | Sbjct 13005139 CGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGGCACGACCCTC 13005198 Query 65956 CTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAG 66015 || |||||| ||||| |||||| || || ||||| |||| | | |||| Sbjct 13005199 CT-GCTCGTATTTCTCATACAGCTTTTCGAATTCATCGCCCCACACATCTTGGAGGCCAG 13005257 Query 66016 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 66075 | |||| | || ||||| | |||||| || || | ||| ||| |||||||| |||| Sbjct 13005258 GGCATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCTCCACGCGTTTCATGAAGA 13005317 Query 66076 GATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 66135 |||| || ||||| || || ||| | ||| | || | || || || || || || | Sbjct 13005318 GATCGGGTATCCACAGGGCGTAAAAGAGATCGCGGGCGCGATTCTCTTCCTTGCCAGTGT 13005377 Query 66136 TCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCA 66195 | || || || || |||||| | | | ||| | ||||| ||||||| ||| ||||| | Sbjct 13005378 TTTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAAGGTTCCAGGTAAATGGCAA 13005437 Query 66196 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 66255 | || || || ||| ||||||||||| | || | || || || | || | Sbjct 13005438 AGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGCGCCACATTGTTGAAGACCC 13005497 Query 66256 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTG 66315 ||| ||| |||| | |||||||| || || || || || | || || | || ||| Sbjct 13005498 TCAGCATGGGAACCAACCCATTGGACGTTCCGTTTGTGCCACAAATGGAGGTGCCCTTTG 13005557 Query 66316 CACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 66373 ||||||| | | | ||| || || || || || || || ||||| | ||||| Sbjct 13005558 CACGAATGCAATGCACGTTG--AGGCCGATGCCACCAGCAGACTTGGAGATCATAGCGCA 13005615 Query 66374 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 66433 | | | | | | |||||||| || || | ||||| | || || ||||| Sbjct 13005616 CTGCTCCACAGACTTGAATATGCCCTCGATGGAGTCGGCAGTCATGGTCAGCAGGAAACA 13005675 Query 66434 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 66493 |||| || |||| | || | || ||| | || || || || ||||| || Sbjct 13005676 CGACGACAGCTGCGGACGGTTTGTGGCAGCGGCAAACAGCGTGGGCGATGCATGCGTGAA 13005735 Query 66494 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 66553 | || || || |||||||| || || | || | || || ||| | ||| || Sbjct 13005736 GTAGCGCTCCGAGAGGAGATTGTAGGTTTCCACGGCCGCATCAATGTCCTCTCCATGGAT 13005795 Query 66554 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 66613 ||| | || || ||||| | ||||||||| |||| || ||||||| |||| | || Sbjct 13005796 TCCGATCGCCACGCGCATCAGCATGTGCTGTGGTCGCTCGGCGATCTTTCCGTTTCTCTT 13005855 Query 66614 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 66673 | || ||||| |||| || ||||| ||||||||||| || |||||| || || Sbjct 13005856 GAGCAGATAGGAGCGCTCCAGGGTCTTAAAGCCAAAATAGTTATAGCCAAAGTCACGATC 13005915 Query 66674 GTAAATAAT 66682 || || || Sbjct 13005916 ATAGATTAT 13005924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658105970779320