Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq61 248 7e-61 >seq61 Length=22324452 Score = 248 bits (274), Expect = 7e-61 Identities = 503/739 (68%), Gaps = 16/739 (2%) Strand=Plus/Plus Query 20781 ACGGCCATCTCCATCTCTATGTGGGGATGGGGGTCGTAGCCCTCGAGACTCAGA-TCCGC 20839 |||||||| ||||| | || | ||||| || | |||| | | | |||| | ||| | Sbjct 2961873 ACGGCCATGTCCATTTTGATCTTGGGATATGGATTGTAGTCGACTAT-CTCAAAGTCCTC 2961931 Query 20840 GC-GCGTAAAGTCCTCCAGACGCGCCACCTTTCTCAAAATCTTCAGCCGCGGAAACGGAC 20898 | ||| ||| ||||| | | ||||| | | ||| ||||| ||||| || | Sbjct 2961932 GAAGCGGAAA-TCCTCGATGTCCTGCACCTGACGCTTAATGATCAGCTTGGGAAAGGGTC 2961990 Query 20899 GCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGT 20958 |||| || | | ||||||| | ||| || || || ||||| ||| ||||| | || Sbjct 2961991 GCGGTGTGCGCTGCAGCTGCTCCTTCAGCGGCTCGACATGGTTCAGGTAGACGTGCGTGT 2962050 Query 20959 CACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACG 21018 | |||| |||||| |||||||| ||||| |||| ||||| || || ||||||| | | Sbjct 2962051 CGCCCATGGTGTGGACAAAGTCGCCCGGCTTCAGACCCGTCACATGGGCGATCATGTGGG 2962110 Query 21019 TCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCT 21078 | || ||||| ||| ||||||||| || || || || |||||||| |||||| ||||| Sbjct 2962111 TGAGCAGGGCATAGGAGGCGATGTTGAATGGCACGCCCAGGCCCATATCGGCGCTCCTCT 2962170 Query 21079 GGTACAGCTGGCAGGACAGCTCCCCCCGAGCC------ACGTAAAACTGACACAAAACGT 21132 |||| ||||| || |||||||| || || | | ||||||||||| || || Sbjct 2962171 GGTAGAGCTGACACGACAGCTCACCGCGCGTCTGGGAGACGTAAAACTGCGCCAGGCAGT 2962230 Query 21133 GACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGC 21192 |||| ||||| || |||||| || || ||| || ||||| || |||| | ||||| Sbjct 2962231 GACACGGAGGCAGGGCCATCTTCGGGATATCCAGCGGATTCCAAGCCGACATGATGATGC 2962290 Query 21193 GCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCT 21252 ||||||| ||| | || || || | ||| | |||||||| || | |||| Sbjct 2962291 GCCGATCTGAGGGGTTATTCTTGATGGTGTCGATCACCTGGCGCAGCTGATCGATTCCCT 2962350 Query 21253 GACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACC 21312 || ||||| | ||||| |||||||||||| ||||| | ||||||||| | Sbjct 2962351 TGCCGCTGTAGTCGTCGTCGCAGGTGGCGTACTCCGCCCCGAAATGCCGCCACTGGAAGC 2962410 Query 21313 CGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGG 21372 |||||||||| ||||||||||| | ||| ||| ||| ||| || ||| ||| Sbjct 2962411 CGTACACCGGGCCCAGATCGCCAACTGCGCGTTCCGTGAACCCCAGCTTGTCCAGAAACT 2962470 Query 21373 CGCGGGACCCGTGCGCGTCCCAAATTTTTACG--CCGCGGC-GCGACAGTTCGGTGGAGT 21429 | | || | || | ||||||| || | ||| | || | || || | ||| || Sbjct 2962471 CTCTGGTGCTGTTCCCGTCCCAGATGTGCACGTTCTTCGCCTGCAGCAACT---TGGCGT 2962527 Query 21430 CGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTT 21489 | || |||| | |||||||||| |||||| | || | | | || |||| | Sbjct 2962528 CCGTCTTGCCCGCCACGAACCACAGCAGCTCCTCGGCCACAGCGCGGAAGAAGACCCGCT 2962587 Query 21490 TGGTGGTTAACAGAGGAAA 21508 ||||||| | ||| ||||| Sbjct 2962588 TGGTGGTCAGCAGTGGAAA 2962606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427733650577040