Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5 105 7e-18 seq1 105 7e-18 seq119 104 2e-17 seq67 104 2e-17 seq61 104 2e-17 >seq5 Length=900 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || ||||||| || ||||| || || ||||| || ||| Sbjct 393 GCCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 334 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||| ||||| || || || |||||| ||| |||||||| || || Sbjct 333 CAGGGTGCGTCCGTCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 274 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | || |||| ||||| || Sbjct 273 GATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCAAC 214 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||||| || || ||||| || ||||| Sbjct 213 CTCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 166 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || ||||||| || ||||| || || ||||| || ||| Sbjct 849 GCCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 790 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||| ||||| || || || |||||| ||| |||||||| || || Sbjct 789 CAGGGTGCGTCCGTCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 730 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | || |||| ||||| || Sbjct 729 GATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCAAC 670 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||||| || || ||||| || ||||| Sbjct 669 CTCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 622 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || ||||| | || ||||| || || ||||| || ||| Sbjct 621 GCCACCACGCAGACGCAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 562 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||| ||||| || || || |||||| ||| |||||||| || || Sbjct 561 CAGGGTGCGTCCGTCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 502 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | || |||| ||||| || Sbjct 501 GATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCAAC 442 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||||| || || ||||| || ||||| Sbjct 441 CTCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 394 >seq1 Length=21770863 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || ||||||| || ||||| || || ||||| || ||| Sbjct 2175851 GCCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 2175910 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||| ||||| || || || |||||| ||| |||||||| || || Sbjct 2175911 CAGGGTGCGTCCGTCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 2175970 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | || |||| ||||| || Sbjct 2175971 GATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCAAC 2176030 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||||| || || ||||| || ||||| Sbjct 2176031 CTCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 2176078 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || ||||| | || ||||| || || ||||| || ||| Sbjct 2175623 GCCACCACGCAGACGCAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 2175682 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||| ||||| || || || |||||| ||| |||||||| || || Sbjct 2175683 CAGGGTGCGTCCGTCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 2175742 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | || |||| ||||| || Sbjct 2175743 GATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCAAC 2175802 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||||| || || ||||| || ||||| Sbjct 2175803 CTCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATCTGCAT 2175850 >seq119 Length=24197627 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| || ||||| || || ||||| || || Sbjct 4458895 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 4458954 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | || ||||||||||| || || |||||||||| |||||||| ||||| Sbjct 4458955 AGAGTGCGTCCA-TCCTCGAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGG 4459013 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | ||||| | ||||| || Sbjct 4459014 AATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGATGGCTCAAC 4459073 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||| |||||||| || || ||||| || |||||| Sbjct 4459074 TTCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 4459122 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| || ||||| || || ||||| || || Sbjct 4461617 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 4461676 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | || |||||||| || || || |||||||||| |||||||| || || Sbjct 4461677 AGAGTGCGTCCA-TCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 4461735 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCA 139715 || || || || || ||| | || | || | | || || | |||| ||||||| Sbjct 4461736 GATTCCCTCCTTATCC-TGAATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCA 4461794 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | ||||| || ||||| || || || || || ||||| Sbjct 4461795 CCTCCAAAGTGATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 4461843 >seq67 Length=2158 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || ||||| | || ||||| || ||||||||||| || | |||| Sbjct 1155 CGCAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCA 1096 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || ||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct 1095 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 1036 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | ||| | | ||| | || || | || || ||||||| || | Sbjct 1035 TC-CTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGAT 977 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| || | || || ||||| || ||||| Sbjct 976 GGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 941 >seq61 Length=22324452 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| || || ||||| || ||| | Sbjct 4253769 CCACCACGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 4253710 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| || ||||| || || || |||||||||| |||||||| || || Sbjct 4253709 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 4253650 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || || || ||| || || | | || | ||||| | ||||||||| Sbjct 4253649 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACC 4253590 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGC 139767 || | ||| | ||||||||||| | ||||| ||||| |||||||| || Sbjct 4253589 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCATGGC 4253540 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || ||||| | || ||||| || ||||||||||| || | |||| Sbjct 13090688 CGCAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCA 13090629 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || ||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct 13090628 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 13090569 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | ||| | | ||| | || || | || || ||||||| || | Sbjct 13090568 TC-CTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGAT 13090510 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| || | || || ||||| || ||||| Sbjct 13090509 GGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 13090474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496013630901600