Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq61 398 1e-105 seq104 196 7e-45 >seq61 Length=22324452 Score = 398 bits (440), Expect = 1e-105 Identities = 1221/1870 (65%), Gaps = 26/1870 (1%) Strand=Plus/Plus Query 78708 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 78767 ||||| || ||||| ||||||| | | || || || || || |||||||||||||| Sbjct 13004065 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTGCGCAGATAGTACATTCC 13004124 Query 78768 CGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGG 78827 ||||| ||||| |||| |||||| || || || ||||| || | || Sbjct 13004125 GGTTTTGAGACCAGCTTTCCAGGAGTAGAAGTGTATGGAGGTCAGTTTTCCGTAGTTTGG 13004184 Query 78828 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 78887 ||||| | ||| || || | || ||||| ||||| |||||||| || | || || || Sbjct 13004185 CTCTGCCACATGAATGTTGAATGACTGACTCTGATCTATGAAGGCACCACGATCGGCGGC 13004244 Query 78888 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 78946 |||||| || | | ||| || |||||||| | || || || | |||| | | Sbjct 13004245 CATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTAGAGATCGCGAACCTT 13004304 Query 78947 CTTCTGGAAGGTTTGTAT--TCTGAATGGATCCACCATCTGCC-ATAATCCTATTCTTGA 79003 || ||| || | || | || || || || || ||| || ||| ||||| | Sbjct 13004305 CTGGGGGATGGCCTCGATGTTTTGGATTGAGCC-CCGGCTGGATATGATCTGGTTCTTCA 13004363 Query 79004 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 79063 | || || | ||| || | |||||||| | | || | ||| | || || || | Sbjct 13004364 TGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAGCAAATGATGGTTGACCACCT 13004423 Query 79064 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATT 79123 ||||||| || |||| |||| || ||||| || || ||||||| || || | |||| Sbjct 13004424 GAAATTCGCCGGACAGAACTCGCCTGGTGTATATGTTCGTGGTATAGGGCTCGAAGGATT 13004483 Query 79124 CATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTAT 79183 |||| || |||| ||| ||||| || || || || ||||| || || |||| | | Sbjct 13004484 CATTGTTGCCCATAATCTGAGCTGTGGAAGCAGTGGGCATCGGAGCAACCAGCAGGGAGT 13004543 Query 79184 TTCTAAGACCGTA-TGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGAC 79242 | | | |||| || | |||| || || || | ||| ||||| || | | Sbjct 13004544 TCCGGACGCCGTGCTGCT-TGATGGACTCCTTCAGTTTCTGCCAGTCCCAGAGGTTCGTT 13004602 Query 79243 GGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACT-AGCGTATGATCCTGTGTA 79301 ||||| | ||| | || || || | ||| || || || | || ||| ||| Sbjct 13004603 GGGACCTTGTCCCACATGTCGTACTGCAAAATTCCCTTGCTCACCGGGCTGCCCTC-GTA 13004661 Query 79302 TGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATA 79361 ||||| || || || || | ||| | |||||| || || || || || || || || Sbjct 13004662 GGTTTCGTATGGACCCTCAGCCTGGGCCAGTTCACAGCTGGCTTCCAAGGCGCCATAGTA 13004721 Query 79362 AATGGTTTCGAAAATCTTCTTATTGA---GATCTTGTGCTTCTAGGCTATCAAATGGATA 79418 ||||||||||||||||| || ||| | || | |||||| || ||| |||| | Sbjct 13004722 AATGGTTTCGAAAATCTGCTGATTCAACAGACCG---GCTTCTTCACTCTCATATGGGAA 13004778 Query 79419 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 79478 | ||| || | |||||| || ||||| ||||||||||| || | || | || || Sbjct 13004779 TCGCATGAGGATCAGCGCGTCAGCGAATCCCTGAACACCAATGCCAACGGGACGGTGCCT 13004838 Query 79479 CTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 79538 | ||| || | | || ||||| | |||||||| || ||||| ||||| || || || Sbjct 13004839 CAAATTGGACTTCTTTGCCTCTGGCAGGGGATAATAGTTGATATCAATAATCTTGTTAAG 13004898 Query 79539 ATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA--TCGTC-CATC 79595 ||| | | || ||| || |||||||| || |||||| | || || | Sbjct 13004899 ATTTTTTGTAACTATCTTGGTGACTTCCTTTAGCTTCTTGAAATCATACGTCTTCTCCGG 13004958 Query 79596 TATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC 79655 | | ||||||||||| | |||| ||||| || || || || |||| ||||| | | Sbjct 13004959 TGTGACAAACATGTTGAGGGCGATGGATGCAAGGTTGCAGACTGCTATCTCATCCGGCGC 13005018 Query 79656 CGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTG 79715 | |||| | ||||| ||||| | ||| || ||||| ||||| || | ||| || || Sbjct 13005019 GGAGTATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCAACATTCTGCTG 13005078 Query 79716 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTG 79775 ||| ||||| |||| ||||| ||||| | || ||| ||||| | |||||||| | || Sbjct 13005079 ATTGCTCTTCCTGTTGCACGCGTCCTTGAAGAGCATGTACGGATTTCCAGTTTCCACTTG 13005138 Query 79776 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTC 79835 | || || || || ||| | | | ||||||| | | ||| | | | Sbjct 13005139 CGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTG--GCACGACCC 13005196 Query 79836 TCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCA 79893 || | ||||||| ||| | |||||| || || ||||| ||||| | | ||| Sbjct 13005197 TCCTGCTCGTATTTCTCATACAGCTTTTCGAATTCATCGCCCCACACATCTTGGAGGCCA 13005256 Query 79894 GGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAG 79953 || |||| || || ||||| | |||||| || |||| ||| || |||||||| ||| Sbjct 13005257 GGGCATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCTCCACGCGTTTCATGAAG 13005316 Query 79954 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 80013 ||||| || ||||| || || ||| ||||| | || | || ||| || || || || Sbjct 13005317 AGATCGGGTATCCACAGGGCGTAAAAGAGATCGCGGGCGCGATTCTCTTCCTTGCCAGTG 13005376 Query 80014 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 80073 || || || || || |||||| | | | ||| || ||||| ||||||| ||| ||||| Sbjct 13005377 TTTTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAAGGTTCCAGGTAAATGGCA 13005436 Query 80074 ATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 80133 | | || || || ||| ||||||||||| | || | || || || | || Sbjct 13005437 AAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGCGCCACATTGTTGAAGACC 13005496 Query 80134 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTG 80193 |||| ||| |||| | |||||||| || || || || || | || || | || | Sbjct 13005497 CTCAGCATGGGAACCAACCCATTGGACGTTCCGTTTGTGCCACAAATGGAGGTGCCCTTT 13005556 Query 80194 GCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 80251 |||||||| | | | ||| || || || || || || || ||||| | |||| Sbjct 13005557 GCACGAATGCAATGCACGTTG--AGGCCGATGCCACCAGCAGACTTGGAGATCATAGCGC 13005614 Query 80252 ATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAAC 80311 | | | | | | | |||||||| ||| || || ||||| | || || |||| Sbjct 13005615 ACTGCTCCACAGACTTGAATATGCCCTCGATGGAGTCGGCAGTCATGGTCAGCAGGAAAC 13005674 Query 80312 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 80371 | |||| || |||| | || | || ||| | || || || || ||||| | Sbjct 13005675 ACGACGACAGCTGCGGACGGTTTGTGGCAGCGGCAAACAGCGTGGGCGATGCATGCGTGA 13005734 Query 80372 ACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAA 80431 | | || || || |||||||| || || | || | || || ||| | ||| | Sbjct 13005735 AGTAGCGCTCCGAGAGGAGATTGTAGGTTTCCACGGCCGCATCAATGTCCTCTCCATGGA 13005794 Query 80432 TTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTT 80491 |||| | ||| || ||||| | ||||||||| |||| || ||||||| ||| | | Sbjct 13005795 TTCCGATCGCCACGCGCATCAGCATGTGCTGTGGTCGCTCGGCGATCTTTCCGTTTCTCT 13005854 Query 80492 TCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 80551 | | || || || |||| || ||||| ||||||||||| || |||||| || | Sbjct 13005855 TGAGCAGATAGGAGCGCTCCAGGGTCTTAAAGCCAAAATAGTTATAGCCAAAGTCACGAT 13005914 Query 80552 CGTAAATAAT 80561 | || || || Sbjct 13005915 CATAGATTAT 13005924 >seq104 Length=21139217 Score = 196 bits (216), Expect = 7e-45 Identities = 552/841 (66%), Gaps = 15/841 (2%) Strand=Plus/Minus Query 49660 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 49719 |||||||| ||||| || ||||| ||| || ||||| || || ||||| |||| Sbjct 9083990 ACTCCCATGCGCTGGTACTCTCCCACCTTTTTCTCAAAAAAGTTGGTCTTTCCATCCAGC 9083931 Query 49720 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 49779 ||||| | |||||||| | || || || | || || || || || ||||| Sbjct 9083930 GATATCATCTCCATGAAGTTGAAGGGGTTCTTGGTGTTGTAGATCTTCCCAACGCCCAAC 9083871 Query 49780 TCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 49839 || || ||| | |||||| || || ||||| || ||||| ||||||||||| Sbjct 9083870 TCCACAAGCAAACGATCCGCCACGAACTCTATGTACTGGGACATCAGGTCACAATTCATG 9083811 Query 49840 CCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCT 49899 || || | ||||| || || || | || || ||||| || ||||| | || || || Sbjct 9083810 CCGATTAAATTAACAGGCAGGGCATCGGTGAGGAATTCCTGCTCAATCGCCACTGCGTCG 9083751 Query 49900 GTTATAATAGATCTAACGGTTTCT-TCACTC---GGTGGATGCAATAAATGTTTAAACAT 49955 || ||||| | | | || | | ||| | |||| | || | ||||| Sbjct 9083750 CGGAT----GATCTCGATGATGCGCTCGCGCTTGGGTCGCTGCACCAGGTGCTGGAACAT 9083695 Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 || || || |||||||||| |||||||| | | || || |||||||| || || Sbjct 9083694 CAGCACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGT 9083635 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA--TGACCCAGAA 50073 ||||| ||||| || || ||||| |||||||| || || || || || || | | ||| Sbjct 9083634 CAGTCCAGGCATAAGACCGCGCTTCTTAAGCCAGAAAATAGAGGCGAAGCTGCCGCTGAA 9083575 Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC--GCTGT 50131 || |||| || || || ||||||||||| | | | ||| ||| || |||| || Sbjct 9083574 AA--AGATGCCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCAAAATTGGCCGACTTA 9083517 Query 50132 CATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 | | ||||| | ||||| || ||||| || ||| ||||||||||| || Sbjct 9083516 GAGGAAATCCAGGAAAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCAATA 9083457 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 || || || || || | | | | ||| | ||||| ||||||| | ||| Sbjct 9083456 GCGTTGAACAGGTACTCTCGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAGCACACTG 9083397 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 ||||| ||||| || | ||| || ||||| |||||||| |||||||| || | ||||| Sbjct 9083396 TACATCTCCGAGTGCACGTTCTCCATGGCAATCTGAAAGCCGTAGAAGCAGCGTGCCTCT 9083337 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 || |||||||| || || || ||||| | | ||| || || || || || || | Sbjct 9083336 GTGATCTGCACCTCCTGACTGAAGCGTTCCACCAGATTCTCGTTTACGATGCCATCGGAG 9083277 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 || || || || |||| || || || ||||| |||| | | || | | Sbjct 9083276 GCGGCGAAGAAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGC 9083217 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || ||| | | || || || | ||| || || || || ||||| || || ||||| ||| Sbjct 9083216 CAGTCAGTAAGGTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAGGCCTCAGCC 9083157 Query 50491 T 50491 | Sbjct 9083156 T 9083156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718195868781720