Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq119 95.1 9e-15 seq1 93.3 3e-14 >seq119 Length=24197627 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | ||||| || | || |||||| || | |||||||||||| Sbjct 4460610 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 4460669 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| |||| ||| |||||||| || |||| ||||| ||||| | || Sbjct 4460670 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGA 4460729 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || | ||| ||||| || ||| || Sbjct 4460730 ATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGAAGGCTCAACT 4460789 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| ||||| ||||| || || ||||| Sbjct 4460790 TCCAGGGTGATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 4460836 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | ||||| || | || |||||| || | |||||||||||| Sbjct 4459123 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 4459182 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| |||| ||| |||||||| || |||| ||||| ||||| | || Sbjct 4459183 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGA 4459242 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || | ||| ||||| || ||| || Sbjct 4459243 ATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGAAGGCTCAACT 4459302 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| | ||| ||||| || || ||||| Sbjct 4459303 TCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 4459349 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | ||||| || | || |||||| || | |||||||||||| Sbjct 4459786 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 4459845 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| |||| ||| |||||||| || |||| ||||| ||||| | || Sbjct 4459846 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 4459905 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || ||| ||| | || || | ||| ||||| | ||| || Sbjct 4459906 ATTCCCTCCTTATC-CTGAATCTTGGCCTTCACATTCTCAATGGTGTCCGACGGCTCAAC 4459964 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| ||||| ||||| || || ||||| Sbjct 4459965 CTCCAAAGTGATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 4460012 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | ||||| || | || |||||| || | |||||||||||| Sbjct 4460838 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 4460897 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| |||| ||| |||||||| || |||| ||||| ||||| | || Sbjct 4460898 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGA 4460957 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || | ||| ||||| || ||| || Sbjct 4460958 ATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGAAGGCTCAACT 4461017 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| | ||| ||||| || || ||||| Sbjct 4461018 TCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 4461064 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | ||||||||||||| || ||| |||| |||| ||| |||||||| || Sbjct 4460417 CTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAA 4460476 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 |||| ||||| ||||| | || | || || || || |||| | || || | Sbjct 4460477 GATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATT 4460536 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||||| | ||| || || | || || || |||||||| ||||| ||||| Sbjct 4460537 CTCAATGGTGTCTGATGGCTCAACTTCCAGGGTGATGGTCTTTCCGGTCAGAGTCTTCAC 4460596 Query 43098 AAAAATTTGCAT 43109 || || ||||| Sbjct 4460597 GAAGATCTGCAT 4460608 >seq1 Length=21770863 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| |||||||| | | ||||| || | ||| |||||| || | |||||| ||||| Sbjct 2176079 GCCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGA 2176138 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || ||| |||| ||||| || || ||||| || ||||| ||||| ||||| | || Sbjct 2176139 CAGGGTGCGTCCGTCCTCCAACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 2176198 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| | ||||| | | | || ||| | ||| || Sbjct 2176199 GATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCAAC 2176258 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || || || || ||||| ||||||||||| || Sbjct 2176259 CTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAAATTTGCATATT 2176309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381331844767134