Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq61 331 1e-85 seq104 174 2e-38 >seq61 Length=22324452 Score = 331 bits (366), Expect = 1e-85 Identities = 1203/1871 (64%), Gaps = 28/1871 (1%) Strand=Plus/Plus Query 70791 CTTGTCCAATGTAAACTGAATGGGAGAGGATGC-GGCTTTCGTACGTAGATAGTACATGC 70849 ||||| || || |||||||||| | | || |||||| || || ||||||||||| | Sbjct 13004065 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTT-GTGCGCAGATAGTACATTC 13004123 Query 70850 CTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAG 70909 | ||||| ||||| |||| ||| || || || || ||||| ||| | | Sbjct 13004124 CGGTTTTGAGACCAGCTTTCCAGGAGTAGAAGTGTATGGAGGTCAGTTTTCCGTAGTTTG 13004183 Query 70910 GATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 70969 | || || | ||||| || | |||||||| ||||| |||||||| || | || || | Sbjct 13004184 GCTCTGCCACATGAATGTTGAATGACTGACTCTGATCTATGAAGGCACCACGATCGGCGG 13004243 Query 70970 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATA 71028 ||||||| || | | ||| || |||||||| | || || || | |||| | Sbjct 13004244 CCATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTAGAGATCGCGAACCT 13004303 Query 71029 TCTTCTGGAAGGTTTGTAT--TCTGAATGGATCCACCATCTGCA-ATAATCCTATTTTTG 71085 ||| ||| || | || | || || || || || ||| | || ||| || || Sbjct 13004304 TCTGGGGGATGGCCTCGATGTTTTGGATTGAGCC-CCGGCTGGATATGATCTGGTTCTTC 13004362 Query 71086 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACT 71145 || || || | ||| || | |||||||| | | || | |||| | || || || Sbjct 13004363 ATGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAGCAAATGATGGTTGACCACC 13004422 Query 71146 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGAC 71205 |||||||| || |||| |||| | ||||| || || ||||||| || || | || Sbjct 13004423 TGAAATTCGCCGGACAGAACTCGCCTGGTGTATATGTTCGTGGTATAGGGCTCGAAGGAT 13004482 Query 71206 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTA 71265 ||||| || |||| ||| ||||| || || ||||| ||||| || || |||| || Sbjct 13004483 TCATTGTTGCCCATAATCTGAGCTGTGGAAGCAGTGGGCATCGGAGCAACCAGCAGGGAG 13004542 Query 71266 TTTCTAAGACCATG-TGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGA 71324 || | | || || || | | || || || || | ||| | ||| || | || Sbjct 13004543 TTCCGGACGCCGTGCTGCTTG-ATGGACTCCTTCAGTTTCTGCCAGTCCCAGAGGTTCGT 13004601 Query 71325 TGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT-AGCGTATGATCCTGCAT 71383 ||| || || || || || | || ||| | | Sbjct 13004602 TGGGACCTTGTCCCACATGTCGTACTGCAAAATTCCCTTGCTCACCGGGCTGCCCT-CGT 13004660 Query 71384 ATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAAT 71443 | || |||||||| || || | ||| |||||||| || || || || || ||||| | Sbjct 13004661 AGGTTTCGTATGGACCCTCAGCCTGGGCCAGTTCACAGCTGGCTTCCAAGGCGCCATAGT 13004720 Query 71444 AAATGGTTTCGAAAATCTTCTTATTGA---GATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 |||||||||||||||||| || ||| | || | | |||| || ||| |||| Sbjct 13004721 AAATGGTTTCGAAAATCTGCTGATTCAACAGACCGGCTTCTTCA---CTCTCATATGGGA 13004777 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | | ||| || | |||||| || ||||| ||||| ||||| || | || | ||| | Sbjct 13004778 ATCGCATGAGGATCAGCGCGTCAGCGAATCCCTGAACACCAATGCCAACGGGACGGTGCC 13004837 Query 71561 TCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 71620 || ||| || | | || ||||| | |||||||| || ||||| ||||| || || | Sbjct 13004838 TCAAATTGGACTTCTTTGCCTCTGGCAGGGGATAATAGTTGATATCAATAATCTTGTTAA 13004897 Query 71621 GATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATC-- 71678 ||||| | | || ||| || |||||||| || |||||| | || || Sbjct 13004898 GATTTTTTGTAACTATCTTGGTGACTTCCTTTAGCTTCTTGAAATCATACGTCTTCTCCG 13004957 Query 71679 -TATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 71737 | | ||||||| ||| | ||| | ||||| || || || || |||| ||||| | Sbjct 13004958 GTGTGACAAACATGTTGAGGGCGATGGATGCAAGGTTGCAGACTGCTATCTCATCCGGCG 13005017 Query 71738 CGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 71797 ||| |||| | ||||| ||||| | || || ||||||||||| || | ||| || | Sbjct 13005018 CGGAGTATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCAACATTCTGCT 13005077 Query 71798 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCT 71857 |||| ||||| |||| ||||| ||||| | || || ||||| | |||||||| | | Sbjct 13005078 GATTGCTCTTCCTGTTGCACGCGTCCTTGAAGAGCATGTACGGATTTCCAGTTTCCACTT 13005137 Query 71858 GAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTT 71917 | | || || || || ||| | | | ||||||| | ||| | | | Sbjct 13005138 GCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAA--CCGTTCGGTTGGCACGACC 13005195 Query 71918 CTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCC 71975 ||| | ||||||| ||| | |||||| || || ||||| ||| | | || Sbjct 13005196 CTCCTGCTCGTATTTCTCATACAGCTTTTCGAATTCATCGCCCCACACATCTTGGAGGCC 13005255 Query 71976 AGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAA 72035 ||| |||| | || ||||| | ||||| || |||| | | || |||||||| || Sbjct 13005256 AGGGCATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCTCCACGCGTTTCATGAA 13005315 Query 72036 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 72095 |||||| || ||||| || || ||| ||||| | || | || ||| || || || || Sbjct 13005316 GAGATCGGGTATCCACAGGGCGTAAAAGAGATCGCGGGCGCGATTCTCTTCCTTGCCAGT 13005375 Query 72096 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 72155 || || || || || |||||| | | | ||| || ||||| ||||||| ||| ||||| Sbjct 13005376 GTTTTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAAGGTTCCAGGTAAATGGC 13005435 Query 72156 CATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 72215 | | || || || ||| ||||||||||| | || | || || || | || Sbjct 13005436 AAAGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGCGCCACATTGTTGAAGAC 13005495 Query 72216 TCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACT 72275 |||| ||| |||| | |||||||| | || || || || | || || | || | Sbjct 13005496 CCTCAGCATGGGAACCAACCCATTGGACGTTCCGTTTGTGCCACAAATGGAGGTGCCCTT 13005555 Query 72276 GGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 72333 |||||||| | ||| ||| || || || || || || || ||||| | ||| Sbjct 13005556 TGCACGAATGCAATGCACGTTG--AGGCCGATGCCACCAGCAGACTTGGAGATCATAGCG 13005613 Query 72334 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 72393 || | | | | | | |||||||| || || | ||||| | || || ||| Sbjct 13005614 CACTGCTCCACAGACTTGAATATGCCCTCGATGGAGTCGGCAGTCATGGTCAGCAGGAAA 13005673 Query 72394 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 72453 || |||| || |||| | || | || ||| | || || || || ||||| Sbjct 13005674 CACGACGACAGCTGCGGACGGTTTGTGGCAGCGGCAAACAGCGTGGGCGATGCATGCGTG 13005733 Query 72454 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGT 72513 || | || || || |||||||| || || | || | || || ||| | ||| Sbjct 13005734 AAGTAGCGCTCCGAGAGGAGATTGTAGGTTTCCACGGCCGCATCAATGTCCTCTCCATGG 13005793 Query 72514 ATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATT 72573 ||||| | ||| || ||||| | ||| ||||| |||| || ||||||| ||| | Sbjct 13005794 ATTCCGATCGCCACGCGCATCAGCATGTGCTGTGGTCGCTCGGCGATCTTTCCGTTTCTC 13005853 Query 72574 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 72633 || | || ||||| |||| || ||||| ||||||||||| || |||||| || Sbjct 13005854 TTGAGCAGATAGGAGCGCTCCAGGGTCTTAAAGCCAAAATAGTTATAGCCAAAGTCACGA 13005913 Query 72634 TCGTAAATAAT 72644 || || || || Sbjct 13005914 TCATAGATTAT 13005924 >seq104 Length=21139217 Score = 174 bits (192), Expect = 2e-38 Identities = 484/736 (66%), Gaps = 15/736 (2%) Strand=Plus/Minus Query 41765 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAAT 41824 |||||||| ||||| || ||||| ||| || ||||| || |||||||| |||| Sbjct 9083990 ACTCCCATGCGCTGGTACTCTCCCACCTTTTTCTCAAAAAAGTTGGTCTTTCCATCCAGC 9083931 Query 41825 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 41884 ||||| | |||||||| | || || || | || || || || || ||||| Sbjct 9083930 GATATCATCTCCATGAAGTTGAAGGGGTTCTTGGTGTTGTAGATCTTCCCAACGCCCAAC 9083871 Query 41885 TCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATT 41944 || || ||| | ||| || | ||| ||||| || ||||| ||||||||||| Sbjct 9083870 TCCACAAGCAAACGATCCGCCACGAACTCTATGTACTGGGACATCAGGTCACAATTCATG 9083811 Query 41945 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 42004 || || | ||||| || || || | || || ||||| || ||||| | || ||||| Sbjct 9083810 CCGATTAAATTAACAGGCAGGGCATCGGTGAGGAATTCCTGCTCAATCGCCACTGCGTCG 9083751 Query 42005 GTTATAATAGATCTTACTGTTTCT-TCACTC---GGTGGATACAATAAATGTTTAAACAT 42060 || ||||| || | | || | | ||| | | || | || | ||||| Sbjct 9083750 CGGAT----GATCTCGATGATGCGCTCGCGCTTGGGTCGCTGCACCAGGTGCTGGAACAT 9083695 Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 || || || |||||||||| ||||| || | | || | |||||||| || || Sbjct 9083694 CAGCACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGT 9083635 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAA--TGATCCAGAA 42178 ||||| ||||| || || ||||| |||||||| || ||||| || || || | ||| Sbjct 9083634 CAGTCCAGGCATAAGACCGCGCTTCTTAAGCCAGAAAATAGAGGCGAAGCTGCCGCTGAA 9083575 Query 42179 AAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACTGT 42236 || |||| || || || || |||||||| || | | ||| ||| || ||| ||| Sbjct 9083574 AA--AGATGCCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCAAAATTGGCCGACTTA 9083517 Query 42237 CATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 | | | |||| | ||||| || ||||| || ||| ||||||||||| || Sbjct 9083516 GAGGAAATCCAGGAAAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCAATA 9083457 Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355 || || || || || | | | | ||| | || || ||||||| | ||| Sbjct 9083456 GCGTTGAACAGGTACTCTCGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAGCACACTG 9083397 Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 ||||| || || || | ||| || ||||| |||||||| |||||||| || | ||||| Sbjct 9083396 TACATCTCCGAGTGCACGTTCTCCATGGCAATCTGAAAGCCGTAGAAGCAGCGTGCCTCT 9083337 Query 42416 GTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 || | ||| || || || || ||||| | | ||| ||||| || || || || | Sbjct 9083336 GTGATCTGCACCTCCTGACTGAAGCGTTCCACCAGATTCTCGTTTACGATGCCATCGGAG 9083277 Query 42476 GCTGCAAAAAACGCCA 42491 || || || || |||| Sbjct 9083276 GCGGCGAAGAAGGCCA 9083261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671071054203480