Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq119 100 3e-16 seq67 95.1 1e-14 seq61 95.1 1e-14 >seq119 Length=24197627 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| || || || || || |||||||||||| | Sbjct 4459123 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 4459182 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| ||||| || || || |||||||||| |||||||| ||||| Sbjct 4459183 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGA 4459242 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| || || || | | || | ||||| | || || ||| Sbjct 4459243 ATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGAAGGCTCAACT 4459302 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| |||||||| || || ||||| || |||||| Sbjct 4459303 TCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 4459350 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| || || || || || |||||||||||| | Sbjct 4460838 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 4460897 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| ||||| || || || |||||||||| |||||||| ||||| Sbjct 4460898 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGA 4460957 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| || || || | | || | ||||| | || || ||| Sbjct 4460958 ATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGAAGGCTCAACT 4461017 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| |||||||| || || ||||| || |||||| Sbjct 4461018 TCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 4461065 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| || || || || || |||||||||||| | Sbjct 4459786 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 4459845 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| ||||| || || || |||||||||| |||||||| || || Sbjct 4459846 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 4459905 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || || || ||| || || | | || | ||||||| || || || Sbjct 4459906 ATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCCGACGGCTCAACC 4459965 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| ||||||| || || ||||| || |||||| Sbjct 4459966 TCCAAAGTGATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCATA 4460013 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| || || || || || |||||||||||| | Sbjct 4460610 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 4460669 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| ||||| || || || |||||||||| |||||||| ||||| Sbjct 4460670 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGA 4460729 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| || || || | | || | ||||| | || || ||| Sbjct 4460730 ATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGAAGGCTCAACT 4460789 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| ||||||| || || ||||| || |||||| Sbjct 4460790 TCCAGGGTGATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCATA 4460837 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| || |||| || || || || || |||||||||||| || |||| |||||| Sbjct 4460399 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTC 4460458 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||||| || || || |||||||||| |||||||| ||||| || || || ||||| Sbjct 4460459 CAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTG 4460518 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || || || | | || | ||||| | || || ||||| | || | ||||| Sbjct 4460519 GATCTTAGCCTTCACATTCTCAATGGTGTCTGATGGCTCAACTTCCAGGGTGATGGTCTT 4460578 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||||| || || ||||| || |||||| Sbjct 4460579 TCCGGTCAGAGTCTTCACGAAGATCTGCATA 4460609 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| || || || || || |||||||||||| | Sbjct 4460242 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 4460301 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| ||||| || || || |||||||||| |||||||| ||||| Sbjct 4460302 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGA 4460361 Query 143078 ATGCCTTCTTTGTC 143091 || || || ||||| Sbjct 4460362 ATTCCCTCCTTGTC 4460375 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || || || | || || || || || ||||||||||| Sbjct 4458667 CCTCCGCGGAGACGGAGCACCAAGTGCAAAGTTGACTCCTTCTGGATGTTGTAATCAGAA 4458726 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | || || || ||||| || || |||||||||| |||||||| ||||| Sbjct 4458727 AGAGTGCGTCCA-TCCTCTAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGG 4458785 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| || || || | | || | ||||| | || || || Sbjct 4458786 AATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATGGTGTCTGAAGGCTCAAC 4458845 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | || | ||||| |||||||| || || ||||| || |||||| Sbjct 4458846 TTCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCATA 4458894 >seq67 Length=2158 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || || || ||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct 1095 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 1036 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || ||| | | ||| | || |||| ||||| || |||| ||| | Sbjct 1035 TCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATG 976 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||| || | || || ||||| || ||||| Sbjct 975 GTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 941 >seq61 Length=22324452 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || || || ||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct 13090628 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 13090569 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || ||| | | ||| | || |||| ||||| || |||| ||| | Sbjct 13090568 TCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATG 13090509 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||| || | || || ||||| || ||||| Sbjct 13090508 GTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 13090474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506962919025360