Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq104 313 4e-80 seq61 233 3e-56 seq1 206 4e-48 >seq104 Length=21139217 Score = 313 bits (346), Expect = 4e-80 Identities = 584/852 (69%), Gaps = 38/852 (4%) Strand=Plus/Plus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTAC-GAT 125096 ||||| ||||||| || ||||| ||||| ||||| ||| ||||||||||||| ||| || Sbjct 9083156 AGGCTGAGGCCTCTTTCTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCT-TACTGAC 9083214 Query 125097 TGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTT 125156 ||| | || ||| || ||||| | || || |||||| | |||||||||| Sbjct 9083215 TGGCAC---CGCCTGAAGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCTTC 9083271 Query 125157 GCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACC 125216 |||| ||||||||| ||||| ||||| |||||| || ||| ||| ||| ||| || Sbjct 9083272 GCCGCCTCCGATGGCATCGTAAACGAGAATCTGGTGGAACGCTTCAGTCAGGAGGTGCAG 9083331 Query 125217 ATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAA 125276 || |||||| ||||| ||||| || || || || ||||||||||||||||| Sbjct 9083332 ATCACAGAGGCACGCTGCTTCTACGGCTTTCAGATTGCCATGGAGAACGTGCACTCGGAG 9083391 Query 125277 ATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTT 125336 |||||| | ||||| |||| ||||| || |||||||| | | | || || Sbjct 9083392 ATGTACAGTGTGCTGATCGACACTTACATCCGGGATCCGCACCAGCGAGAGTACCTGTTC 9083451 Query 125337 AACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGATTCGGTG 125392 ||||| || || ||| ||||| || || || ||||| | |||| || || Sbjct 9083452 AACGCTATTGAAACGATGCCGGCT----GTGAAGCGCAAGGCAGACTGGGCCCTTTCCTG 9083507 Query 125393 GA-----TCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTA 125447 || || | | || | | | || | || | | | || || |||||||| Sbjct 9083508 GATTTCCTCTAAGTCGGCCAATTTT-----GGGGAGCGCATCATCGCCTTTGCCGCCGTG 9083562 Query 125448 GAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTC 125507 ||||||||||| || || || || || | || || ||||| ||||||||||| || Sbjct 9083563 GAGGGCATCTTTTTCAGCGGCAGCTTCGCCTCTATTTTCTGGCTTAAGAAGCGCGGTCTT 9083622 Query 125508 ATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGAC 125567 ||||| |||||||| | |||||| |||| ||||| ||||||||| | ||||| ||| Sbjct 9083623 ATGCCTGGACTGACCTTCTCCAACGAGCTTATCTCTCGCGACGAGGGCTTGCACTGCGAC 9083682 Query 125568 TTTGCCATTCTACTGTTTC-GCAACT--ATCTGCGTCCCGAGTGCAGATCCAGCGATGAA 125624 |||||| | || |||| | ||| || | ||| ||| || | | |||| Sbjct 9083683 TTTGCCGTGCTGATGTTCCAGCACCTGGTGCAGCGACCCAAGCG-----CGAGCG----- 9083732 Query 125625 AAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCC 125684 ||||| | || | ||| || ||| ||| || || || || || ||||| || Sbjct 9083733 --CATCATCGAGATCATCCGCGACGCAGTGGCGATTGAGCAGGAATTCCTCACCGATGCC 9083790 Query 125685 CTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTG 125744 || || || | | || |||||||| || | || |||| | ||||||||||||| ||| Sbjct 9083791 CTGCCTGTTAATTTAATCGGCATGAATTGTGACCTGATGTCCCAGTACATAGAGTTCGTG 9083850 Query 125745 GCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTT 125804 || |||||| | || |||||| | | ||||| |||||| ||||||| ||||| Sbjct 9083851 GCGGATCGTTTGCTTGTGGAGTTGGGCGTTGGGAAGATCTACAACACCAAGAACCCCTTC 9083910 Query 125805 GATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGC 125864 | |||||| | ||||| || || || |||||||||||||| ||||| ||||| | Sbjct 9083911 AACTTCATGGAGATGATATCGCTGGATGGAAAGACCAACTTTTTTGAGAAAAAGGTGGGA 9083970 Query 125865 GAGTACAAACGC 125876 |||||| | ||| Sbjct 9083971 GAGTACCAGCGC 9083982 >seq61 Length=22324452 Score = 233 bits (258), Expect = 3e-56 Identities = 959/1484 (65%), Gaps = 46/1484 (3%) Strand=Plus/Minus Query 96807 ACAAACGGCAACG-CCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGT--CA 96863 |||||||| |||| ||| ||| | || || ||||| || | | ||| |||||| | Sbjct 13005534 ACAAACGG-AACGTCCAATGGGTTGGTTCCCATGCTGAGGGTCTTCAA--CAATGTGGCG 13005478 Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 || || || ||||| ||| || || || || || | ||| | ||| |||||||| Sbjct 13005477 CGTTATGTGGATCAGGGAGGCGGCAAGCGTCCCGGTGCCTTTGCCATTTACCTGGAACCT 13005418 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||| |||| || ||||| || | || || |||||| ||||| |||||| Sbjct 13005417 TGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAAAACACTGGCAAGGAAGAGAAT 13005358 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 || ||| | || | ||||| || || ||| | || ||| | |||||||| ||||| | Sbjct 13005357 CGCGCCCGCGATCTCTTTTACGCCCTGTGGATACCCGATCTCTTCATGAAACGCGTGGAG 13005298 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 | | |||| | ||| || ||||||||| || | || || || ||| ||| Sbjct 13005297 GCCAATGGCGATTGGTCGCTCATGTGCCCCCACAAATGCCCTGGCCTCCAAGATGTGTGG 13005238 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGA 97163 ||||| || || || ||| | |||||||| ||||| || | || Sbjct 13005237 GGCGATGAATTCGAAAAGCTGTATGAGAAATACGAGCAGGAGGGTCGTGCCAACCGAACG 13005178 Query 97164 GTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCG 97223 || | || | | |||||| |||||| | ||| || || || ||||||| |||| Sbjct 13005177 GTTAAGGCTCAATCCCTGTGGTTTGCCATCATTGAGGCGCAAGTGGAAACTGGAAATCCG 13005118 Query 97224 TACATTCTCTACAAGGATACCGTGAATC-GCAACAGCAACCAACGCCACTTGGGCACCAT 97282 ||||| |||| |||||| | ||| | | | || ||||| || | | | |||||||| Sbjct 13005117 TACATGCTCTTCAAGGACGC-GTGCAACAGGAAGAGCAATCAGCAGAATGTTGGCACCAT 13005059 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGT 97342 |||| || ||| ||||||||||||| || || ||| || | ||||| |||| ||||| Sbjct 13005058 CAAGTGCAGCAACTTGTGCACGGAAATCGTTGAATACTCCGCGCCGGATGAGATAGCAGT 13004999 Query 97343 TTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGT---AGAGGGTAAAGTGTTTAATCT 97399 ||| || ||||| || || || |||||| | || || || | || | Sbjct 13004998 CTGCAACCTTGCATCCATCGCCCTCAACATGTTTGTCACACCGGAGAAGACGTATGATTT 13004939 Query 97400 CAAC---CTATTGGCAAAGACGGTGCGTCTGGTGACTAGGAATCTAAACAAGATTATCGA 97456 ||| ||| || | || | | || || | ||||| ||||||||||| || Sbjct 13004938 CAAGAAGCTAAAGGAAGTCACCAAGA---TAGTTACAAAAAATCTTAACAAGATTATTGA 13004882 Query 97457 CAATGCACTCT-ATCCCATTCCCTCGGCTGCCAAGTCAAACTTTAAGCACCGACCCATCG 97515 | | ||| | ||||| | || ||| ||||| || || | |||||| ||| | | Sbjct 13004881 TA-TCAACTATTATCCCCTGCCAGAGGCAAAGAAGTCCAATTTGAGGCACCGTCCCGTTG 13004823 Query 97516 GTATAGGAGTGCAAGGCTACGCAGACGCTCTGGCCATGATGGGTATAGCCTACGAG---- 97571 | || || || || || | ||| ||||| ||| | | ||| | | | || ||| Sbjct 13004822 GCATTGGTGTTCAGGGATTCGCTGACGCGCTGATCCTCATGCGATTCCCATATGAGAGTG 13004763 Query 97572 --GACTCGATGCAGTTGAATCGTGACATTTTCGAAACCATCTACCATGCAGCACTGACGG 97629 || | | |||||||| | |||||||||||||| ||| ||| || || | Sbjct 13004762 AAGAAGCCGGTCTGTTGAATCAGCAGATTTTCGAAACCATTTACTATGGCGCCTTGGAAG 13004703 Query 97630 AGAGTTGCCAACTGGCC-AGAGTGCACGGAGTCTACGAATCGTACCACGGTAGCCCGACC 97688 || || |||||||| || || | || |||||| | ||| | || |||||| Sbjct 13004702 CCAGCTGTGAACTGGCCCAGGCTG-AGGGTCCATACGAAACCTACGAGGGCAGCCCGGTG 13004644 Query 97689 AGTCGTGGAGAGTTGCACTTCGACCGAT---ACTCGGTGCACAGCCAAAAG-TGTGACTG 97744 || ||| ||||| | |||| | || ||| | || | || || ||||| Sbjct 13004643 AGCAAGGGAATTTTGCAGTACGACATGTGGGACAAGGTCC-CAACGAACCTCTGGGACTG 13004585 Query 97745 GTCATCGTTGCGCAAAGA---CATTGCTCGGTACGGTTTGAGAAACTCTTTGCTGGTGGC 97801 | || | | || || ||| | | |||| | | ||||| ||||||| || Sbjct 13004584 G-CA--GAAACTGAAGGAGTCCATCAAGCAGCACGGCGTCCGGAACTCCCTGCTGGTTGC 13004528 Query 97802 ACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCTGAATCTTTTGAACCGTT 97861 ||||||||||| ||| |||| | || | | ||||| |||||| || || || | Sbjct 13004527 TCCGATGCCCACTGCTTCCACAGCTCAGATTATGGGCAACAATGAATCCTTCGAGCCCTA 13004468 Query 97862 CACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTTCAATTGACCAACGTGCA 97921 || | ||||| ||| || || | ||| || || ||||| || |||| || Sbjct 13004467 TACCACGAACATATACACCAGGCGAGTTCTGTCCGGCGAATTTCAGGTGGTCAACCATCA 13004408 Query 97922 CTTGGTTCGAGACTTGGAACG-GCTCAATCTGTGGAACGATGACATGGCCCAGTTGATCA 97980 ||| | || ||| | | || ||| | ||||| |||| |||||| | ||||| Sbjct 13004407 TTTGCTGCGCGACCTA-ACCGAGCTGGACTTGTGGGACGACGACATGAAGAACCAGATCA 13004349 Query 97981 TGTACAACAATGGGTCCATTCAAAACATTA---CCATCATCCCGGAAGAGTTGCGCAGAA 98037 | | || | || || || |||||||| ||||| ||| |||| ||| ||| Sbjct 13004348 TATCCAGCCGGGGCTCAATCCAAAACATCGAGGCCATCC-CCCAGAAG-GTT-CGCGATC 13004292 Query 98038 TCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAG 98097 |||||||||| || ||||| || | |||| | ||| | ||||| ||||| | | Sbjct 13004291 TCTACAAGACGGTGTGGGAAATCTCAGTCAAGTCCACGATTAAAATGGCCGCCGATCGTG 13004232 Query 98098 GTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTC 98157 ||| || ||| || |||||||| || ||||| | | || || ||||| | |||| | Sbjct 13004231 GTGCCTTCATAGATCAGAGTCAGTCATTCAACATTCATGTGGCAGAGCCAAACTACGGAA 13004172 Query 98158 GTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATC 98217 |||| || |||||||| ||| | ||||| || ||||| || || |||||||||| Sbjct 13004171 AACTGACCTCCATACACTTCTACTCCTGGAAAGCTGGTCTCAAAACCGGAATGTACTATC 13004112 Query 98218 TGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261 || | |||||| | || | |||||||| | || || ||| || Sbjct 13004111 TGCGCACAAAGCCAGCTGCGAATGCCATTCAGTTCACCGTGAAC 13004068 Score = 168 bits (186), Expect = 1e-36 Identities = 424/634 (67%), Gaps = 14/634 (2%) Strand=Plus/Minus Query 69896 CCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGCTCTTGTGGATG 69955 || ||| |||| |||||| ||||| || | || ||||||||| ||||| | Sbjct 2962603 CCACTGCTGACCACCAAGCGGGTCTTCTTCCGCGCTGTGGCCGAGGAGCTGCTGTGGTTC 2962544 Query 69956 ATTTCCGGATCGACCAATGCCAAAGAGCTG-AGCCGAAAGGGTGTACACATTTGGAGCGG 70014 | | || ||| | ||||| |||| || |||| | || ||||| ||| ||| Sbjct 2962543 GTGGCGGGCAAGACGGACGCCAAGTTGCTGCAGGCGAA-GAACGTGCACATCTGGGACGG 2962485 Query 70015 CAACAGTAGTCGAAGCGTTT-TGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATC 70073 ||||| | || | |||| |||| ||| || ||||| || | || ||||||| Sbjct 2962484 GAACAGCACCAGA-GAGTTTCTGGACAAGCTGGGGTTCACGGAACGCGCAGTTGGCGATC 2962426 Query 70074 TGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGA-G 70132 |||| || |||||||| ||||||||| |||| | || | |||| | |||||| | Sbjct 2962425 TGGGCCCGGTGTACGGCTTCCAGTGGCGGCATTTCGGGGCGGAGTACGCCACCTGCGACG 2962366 Query 70133 ACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACACTCTCAAGAC 70191 || ||||| || |||| | ||||| ||| | || | || ||||| |||||| Sbjct 2962365 AC-GACTACAGCGGCAAGGGAATCGATCAGCTGC-GCCAGGTGATCGACACCATCAAGAA 2962308 Query 70192 CAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAAT 70251 || || ||||| || | ||| | |||| | |||||||| ||| | | | || Sbjct 2962307 TAACCCCTCAGATCGGCGCATCATCATGTCGGCTTGGAATCCGCTGGATATCCCGAAGAT 2962248 Query 70252 GGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGAT------GGCAAATT 70305 ||| || || ||||||||||| |||| ||||||||| | | | || | | Sbjct 2962247 GGCCCTGCCTCCGTGTCACTGCCTGGCGCAGTTTTACGTCTCCCAGACGCGCGGTGAGCT 2962188 Query 70306 GTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGC 70365 ||| || | || |||||||| ||||| |||||||| || || || || ||||| || Sbjct 2962187 GTCGTGTCAGCTCTACCAGAGGAGCGCCGATATGGGCCTGGGCGTGCCATTCAACATCGC 2962128 Query 70366 AAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTT 70425 |||| | || | || |||||||| || || | || || ||||| || ||| || Sbjct 2962127 CTCCTATGCCCTGCTCACCCACATGATCGCCCATGTGACGGGTCTGAAGCCGGGCGACTT 2962068 Query 70426 CGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCA 70485 || |||||||| |||||| | ||||| || | || || ||||||| | |||| ||| Sbjct 2962067 TGTCCACACCATGGGCGACACGCACGTCTACCTGAACCATGTCGAGCCGCTGAAGGAGCA 2962008 Query 70486 ACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTG 70519 || | || ||| |||| |||||||||||| Sbjct 2962007 GCTGCAGCGCACACCGCGACCCTTTCCCAAGCTG 2961974 >seq1 Length=21770863 Score = 206 bits (228), Expect = 4e-48 Identities = 389/570 (68%), Gaps = 14/570 (2%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | |||||||| ||||| || ||||| | || ||||||||||| || |||||| Sbjct 14667891 TTGCGGAAGAAGATGACGCCGGCGCGTGGACCGCGCAGCGTCTTGTGCGTGGTGGTGGTC 14667950 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 |||||||| | || || || || || | | | || | | |||||| | Sbjct 14667951 ACAATGTCCGCCCATTCGAATGGCGATGGTATCAAGCCGGCGGCCACAATGCCCGCCACA 14668010 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || || ||||||||||| ||| ||| | ||||| |||| ||||||||| Sbjct 14668011 TGGGCCATGTCGGCCATCAGGTAGGCGCCCACATCATCGCATATCTGACGGAATCGTGCG 14668070 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 ||||||| | || | ||||| |||| || ||||| | | || ||| Sbjct 14668071 TAGTCCAGCAGTCGGGAGTAGCACGAAATGCCCGCAATGATGATCTGCGGCCGGAAAGTC 14668130 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 || || ||| || | ||| | ||||| | || || |||| |||| ||| |||||| Sbjct 14668131 TTTGCCGCCTCCGCCAACTTGTCGTAGTCAATGATGCCCGTCTCCGGATTCACTTTGTAC 14668190 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG----GAATCCG 127449 |||||||| ||||| || | ||||| || || | || ||| ||| ||| Sbjct 14668191 GGCATGCTCTCGAAGAATATGGATGTGGCCGATATCTTCTTGGTGGGCGTAAAGAAGCCG 14668250 Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509 ||||||| ||| || || ||||||||||| || |||||||| | | |||| || | Sbjct 14668251 TGCGTCAAGTGACCGCCATCGGGCAGATCCAGACCCATGATGCGATCGTGAGGCCGGCAG 14668310 Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569 | || |||||||| || | |||||| ||| || |||||||| || ||| ||| ||| Sbjct 14668311 ACGCCTGTGTACACAGCCAGATTGGCCGGCGAACCGGAGTACGGCTGCACATTCACGCCC 14668370 Query 127570 CATTCGGACTCGTTCAAATTGAAC-GCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGAT 127628 || | ||| || |||||| |||| | | | || ||||| || ||||| ||||| Sbjct 14668371 CACTTCTCCTCCGCCAGGTTGAACAGCTC-GCGTCCACGTTGCTGGGCCAGCAGCTCGAT 14668429 Query 127629 GCGATCGATAAACTCGTTACCACCATAGTA 127658 ||||||||| |||| || ||||| ||||| Sbjct 14668430 GCGATCGATGTACTCATTGCCACCGTAGTA 14668459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740983954701480