Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq119 93.3 3e-14 seq5 84.2 2e-11 seq1 84.2 2e-11 >seq119 Length=24197627 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || |||||||| || || || || |||||||||||| || | | ||||||| Sbjct 4460627 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTC 4460686 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||| ||| | |||| ||| || || || |||||||| || ||||| Sbjct 4460687 CAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTG 4460746 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| ||| | || ||||| || | || || || | ||| ||||| || Sbjct 4460747 GATCTTAGCCTTCACATTCTCAATGGTGTCTGAAGGCTCAACTTCCAGGGTGATGGTCTT 4460806 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||||||| || || || || |||||| Sbjct 4460807 TCCGGTCAGAGTCTTCACGAAGATCTGCATA 4460837 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || |||||||| || || || || |||||||||||| || | | ||||||| Sbjct 4459140 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTC 4459199 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||| ||| | |||| ||| || || || |||||||| || ||||| Sbjct 4459200 CAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTG 4459259 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| ||| | || ||||| || | || || || | ||| ||||| || Sbjct 4459260 GATCTTAGCCTTCACATTCTCAATGGTGTCTGAAGGCTCAACTTCCAGGGTGATGGTCTT 4459319 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||| || || || || |||||| Sbjct 4459320 TCCGGTCAAAGTCTTCACGAAGATCTGCATA 4459350 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || |||||||| || || || || |||||||||||| || | | ||||||| Sbjct 4459803 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTC 4459862 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||| ||| | |||| ||| || || || || ||||| || || || Sbjct 4459863 CAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTG 4459922 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| ||| ||| | || ||||| || || || || || || ||||| || Sbjct 4459923 AATCTTGGCCTTCACATTCTCAATGGTGTCCGACGGCTCAACCTCCAAAGTGATGGTCTT 4459982 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||||||| || || || || |||||| Sbjct 4459983 TCCGGTCAGAGTCTTCACGAAGATCTGCATA 4460013 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || |||||||| || || || || |||||||||||| || | | ||||||| Sbjct 4460399 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTC 4460458 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||| ||| | |||| ||| || || || |||||||| || ||||| Sbjct 4460459 CAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTG 4460518 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| ||| | || ||||| || || || || | ||| ||||| || Sbjct 4460519 GATCTTAGCCTTCACATTCTCAATGGTGTCTGATGGCTCAACTTCCAGGGTGATGGTCTT 4460578 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||||||| || || || || |||||| Sbjct 4460579 TCCGGTCAGAGTCTTCACGAAGATCTGCATA 4460609 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || |||||||| || || || || |||||||||||| || | | ||||||| Sbjct 4460855 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTC 4460914 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| ||||| ||| | |||| ||| || || || |||||||| || ||||| Sbjct 4460915 CAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTG 4460974 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| ||| | || ||||| || | || || || | ||| ||||| || Sbjct 4460975 GATCTTAGCCTTCACATTCTCAATGGTGTCTGAAGGCTCAACTTCCAGGGTGATGGTCTT 4461034 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||| || || || || |||||| Sbjct 4461035 TCCGGTCAAAGTCTTCACGAAGATCTGCATA 4461065 >seq5 Length=900 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || |||||||| ||| || | | ||||||| Sbjct 374 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 315 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || ||| | |||||||| || || || || ||||| || ||||| Sbjct 314 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 255 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || | || ||||||||| || || || ||||| ||||| || Sbjct 254 ATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTTG 195 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||||||| || || || || ||||| Sbjct 194 CCGGTCAGAGTCTTCACGAAGATCTGCAT 166 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || |||||||| ||| || | | ||||||| Sbjct 830 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 771 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || ||| | |||||||| || || || || ||||| || ||||| Sbjct 770 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 711 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || | || ||||||||| || || || ||||| ||||| || Sbjct 710 ATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTTG 651 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||||||| || || || || ||||| Sbjct 650 CCGGTCAGAGTCTTCACGAAGATCTGCAT 622 >seq1 Length=21770863 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || |||||||| ||| || | | ||||||| Sbjct 2175870 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 2175929 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || ||| | |||||||| || || || || ||||| || ||||| Sbjct 2175930 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 2175989 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || | || ||||||||| || || || ||||| ||||| || Sbjct 2175990 ATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTTG 2176049 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||||||| || || || || ||||| Sbjct 2176050 CCGGTCAGAGTCTTCACGAAGATCTGCAT 2176078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362143344598743