Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq119 104 2e-17 seq473 86.0 5e-12 >seq119 Length=24197627 Score = 104 bits (114), Expect = 2e-17 Identities = 224/330 (68%), Gaps = 5/330 (2%) Strand=Plus/Plus Query 20950 ATAATGCCGCAGCCCAGCCGGCCGCCCGAGTTGCCCGTAACCTTGCTAAGCGGGTGGTCT 21009 |||| ||||||||| | ||| | || | ||||||||| |||||| ||| |||| | Sbjct 11133750 ATAACGCCGCAGCCAATGCGGGCACCAGCGTTGCCCGTTGACTTGCTCAGCTCGTGGCCA 11133809 Query 21010 GTTAAGCCGAGGTCATCGCGATCCGTGTGCACTACCAAGCTACGACCCAATATGCTGAGC 21069 |||||| |||||| ||| | |||||| || | | | || || | |||||| Sbjct 11133810 CCCTTGCCGAGATCATCGGCATCGGCGTGCACGACAACGGTGCGTCCAATGATGCTGTCG 11133869 Query 21070 GGACCAAACAAGCTCATCACGTTGTCGCTCATGTCGACAGGCGTCAGCGCGGTGCAGCCC 21129 | || || | | ||| | |||| | ||| ||| || | || || ||| Sbjct 11133870 GCGCCGAAGAGCGTGATCTTGGAGTCGGTGATGCTGACCTTGGTGGG-GCAGTC--GCCG 11133926 Query 21130 GCGGAGCGGACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGA 21189 | || | |||||||| ||| || | ||| || | | || ||||||||||||| Sbjct 11133927 GTGGCCTCAATGTTGCCCAAATCCCCCAAGTGGCGGTTGTCATCGACGGGAGCGCCGTGC 11133986 Query 21190 TTTTGGTGCGTAGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCC 21248 | | | | ||||| || |||||| |||| ||| ||||||||||| || ||||||| Sbjct 11133987 TCCTTGC-CATAGGGATTGAAGTGCGGTCCGGACGACATGCAGCCGTTGGTGTTGTCGCC 11134045 Query 21249 GAACTCGTGAACGTGAAAGCCGTGCAGTCC 21278 ||||||||| ||||| || |||||||| || Sbjct 11134046 GAACTCGTGCACGTGGAATCCGTGCAGACC 11134075 >seq473 Length=28832112 Score = 86.0 bits (94), Expect = 5e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 34581 GGCGGCGTGGGACTGAACTTAACCGGCGGCAATCACATAATTATGTTGGAGCCCCACTGG 34640 ||||| ||||||||||| | | || | ||||||||| | || |||| | ||||||| Sbjct 6532894 GGCGGAGTGGGACTGAATCTGAACGTAGCCAATCACATGCTAATTGTGGACCTCCACTGG 6532953 Query 34641 AACCCGCAGATCGAACTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAAAAGAAGCGC 34700 ||||||||| | || | ||||| || |||||||| | || || |||| ||||| Sbjct 6532954 AACCCGCAGCTGGAGCGCCAGGCTCAGGACCGCATTTATCGATATGGTCAAACGAAGCCT 6533013 Query 34701 ACCTTCGTCTAC 34712 |||||| ||||| Sbjct 6533014 ACCTTCATCTAC 6533025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414531757681462