Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq67 158 3e-33 seq61 158 3e-33 seq119 136 9e-27 >seq67 Length=2158 Score = 158 bits (174), Expect = 3e-33 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| ||||||||||| || || | || ||||| || || || ||| Sbjct 1137 GTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 1078 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| ||||| ||||||||||| ||||||||||| ||||| Sbjct 1077 GCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTG 1018 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||||| ||||| ||||| || || || ||||| || || || || Sbjct 1017 ACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTC 958 Query 104543 TTTACAAATATCTGCATTTTGT 104564 || || || |||||||| |||| Sbjct 957 TTAACGAAGATCTGCATCTTGT 936 >seq61 Length=22324452 Score = 158 bits (174), Expect = 3e-33 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| ||||||||||| || || | || ||||| || || || ||| Sbjct 13090670 GTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 13090611 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| ||||| ||||||||||| ||||||||||| ||||| Sbjct 13090610 GCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTG 13090551 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||||| ||||| ||||| || || || ||||| || || || || Sbjct 13090550 ACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTC 13090491 Query 104543 TTTACAAATATCTGCATTTTGT 104564 || || || |||||||| |||| Sbjct 13090490 TTAACGAAGATCTGCATCTTGT 13090469 Score = 120 bits (132), Expect = 7e-22 Identities = 212/304 (70%), Gaps = 4/304 (1%) Strand=Plus/Plus Query 238589 CCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACG 238648 ||||||||| || || || | || |||| | || |||||||| | || || || Sbjct 16380790 CCTATGGAACTCGGCGCAACTGCAGCTGGTGCGCGAGGGAAAAATGCACGGCTTTTTGCG 16380849 Query 238649 AATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGA-T 238707 ||||| ||||| |||||||| || ||||||||| | | ||| |||| || || || | Sbjct 16380850 GATGTACTGGGCCAAAAAGATTCTGGAATGGACTGCAACCCCAGAGGAGGCG-TTGGAGT 16380908 Query 238708 ATAGTATTTATCTGAACGATAAATACGAACTCGACGGTACG-GATCCTAACGGATACGTA 238766 | || |||||||| |||||| || || || ||| ||||| ||||| || || Sbjct 16380909 ACGCGATCCTGCTGAACGACAAATACAGTCTGGATGG-ACGCGATCCCAACGGCTATGTG 16380967 Query 238767 GGTTGTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTCTGAGAGACCTATATTT 238826 || || ||||||||||| | || | || |||| || ||| ||| | |||| || Sbjct 16380968 GGCTGCATGTGGTCAATTGGCGGCGTCCATGATATGGGTTGGAAGGAGCGGGCTATTTTC 16381027 Query 238827 GGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGATGTAAATGCTTTT 238886 || || ||| | |||||||| ||| | ||| || ||||| ||||||||||| ||| Sbjct 16381028 GGCAAGGTTCGGTACATGAACTATCAGGGATGCAAACGCAAATTCGATGTAAATGCCTTT 16381087 Query 238887 ATCA 238890 ||| Sbjct 16381088 GTCA 16381091 >seq119 Length=24197627 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || |||||||| ||||| | || || || || || || || Sbjct 4461647 GTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCCTCGAGCTGCTTGCCG 4461706 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || ||||| || |||||||||||||| || || Sbjct 4461707 GCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTGGCCTTC 4461766 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||||| ||| || ||||| | || || ||||| ||||| | || Sbjct 4461767 ACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAAGTGATGGTCTTTCCAGTCAAGGTC 4461826 Query 104543 TTTACAAATATCTGCATTTT 104562 || ||||| ||||||||||| Sbjct 4461827 TTCACAAAGATCTGCATTTT 4461846 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || || || | |||||||| ||||| || || Sbjct 4459816 GTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCG 4459875 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || ||||| || |||||||||||||| || || Sbjct 4459876 GCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTGGCCTTC 4459935 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || ||||| | || || ||||| || || || || Sbjct 4459936 ACATTCTCAATGGTGTCCGACGGCTCAACCTCCAAAGTGATGGTCTTTCCGGTCAGAGTC 4459995 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 4459996 TTCACGAAGATCTGCAT 4460012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151278567132084