Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq61 120 3e-22 >seq61 Length=22324452 Score = 120 bits (132), Expect = 3e-22 Identities = 183/256 (71%), Gaps = 6/256 (2%) Strand=Plus/Minus Query 5239 TCCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACC-TCTT 5297 ||||||||| || ||||| | |||||||| |||||||| |||| || ||| || Sbjct 7404316 TCCGGTAGAGCCAAATCCTGCCTCGCCGCGCTCGGTGTCCTCCAGTTTGTCGACCATCAC 7404257 Query 5298 GAACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAA 5357 | ||| || | | ||||| |||||||| | ||| || || | ||| || | ||| | Sbjct 7404256 CAGTTGC-GGATAGAAGATGCGCTCGCATATGAACTGGGCGATGCGGTCGCCGTGCTTCA 7404198 Query 5358 CCTCAAAGTCGCTGTTTCCGAAG--TTAAACAGCACCACCCCGACATTGCCTCGGTAGTC 5415 |||| || || | || || || ||||| || || |||| |||||| || || || Sbjct 7404197 CCTCGAAATC--TACATCGGAGTGATTGAACAGAACGACGCCGAGATTGCCGCGATAATC 7404140 Query 5416 TTCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGG 5475 ||||| | ||||| |||||||| ||||| |||| || || ||||| ||||||||||| Sbjct 7404139 CTCGTCCACCACGCCGGCGCCCACATCGATGAAGTTCTTCACGGCAAGTCCGGAACGTGG 7404080 Query 5476 TGCTATGCGTCCGTAG 5491 || | || |||||| Sbjct 7404079 GGCCACCCGGCCGTAG 7404064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447704936543760