Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq61 178 9e-40 >seq61 Length=22324452 Score = 178 bits (196), Expect = 9e-40 Identities = 400/594 (67%), Gaps = 19/594 (3%) Strand=Plus/Plus Query 25381 TCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGAT 25440 |||| |||||||||||| || | || ||||| ||||||||| || || || | Sbjct 2961973 TCAGCTTGGGAAAGGGTCGCGGTGTGCGCTGCAGCTGCTCCTTCAGCGGCTCGACATGGT 2962032 Query 25441 CCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAA 25500 |||||||||||| | ||| |||| ||||||||||| || ||||| | || || || | Sbjct 2962033 TCAGGTAGACGTGCGTGTCGCCCATGGTGTGGACAAAGTCGCCCGGCTTCAGACCCGTCA 2962092 Query 25501 CGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACC 25560 | | || ||||||| ||||| || ||| ||||||||| || || || || | | Sbjct 2962093 CATGGGCGATCATGTGGGTGAGCAGGGCATAGGAGGCGATGTTGAATGGCACGCCCAGGC 2962152 Query 25561 CCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGC-TC------AC 25613 |||| || | | ||||||||||||||||||||| ||||| || ||| || || Sbjct 2962153 CCATATCGGCGC-TCCTCTGGTAGAGCTGACACGACAGCTCACCG-CGCGTCTGGGAGAC 2962210 Query 25614 GTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTT 25673 ||||||||| || | || |||||||| || || || | || || || Sbjct 2962211 GTAAAACTGCGCCAGGCAGTGACACGGAGGCAGGGCCATCTTCGGGATATCCAGCGGATT 2962270 Query 25674 CCAGGCGCACACGATGATGCACCTGTCTTCTGGGTTGTCCCTGAT----AAGATCCGCGG 25729 ||| || ||| |||||||| || ||| ||||| | | |||| |||| | Sbjct 2962271 CCAAGCCGACATGATGATGCGCCGATCTGAGGGGTTATTCTTGATGGTGTCGATCACC-- 2962328 Query 25730 TGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TGCCCTCATGTCCGTGTACTCT 25788 | |||||||||| | ||| | || |||||| | | || || | |||||| Sbjct 2962329 --TGGCGCAGCTGATCGATTCCCTTGCCGCTGTAGTCGTCGTCGCAGGT-GGCGTACTCC 2962385 Query 25789 GCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGC 25848 || ||||||| || ||||||||| ||||||||||| || || || ||| || | | | | Sbjct 2962386 GCCCCGAAATGCCGCCACTGGAAGCCGTACACCGGGCCCAGATCGCCAACTGCGCGTTCC 2962445 Query 25849 TCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCC 25908 || ||| ||| |||| ||| ||||||| | || |||||||||| | || | Sbjct 2962446 GTGAACCCCAGCTTGTCCAGAAACTCTCTGGTGCTGTTCCCGTCCCAGATGTGCACGTTC 2962505 Query 25909 TTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 25962 ||| | ||| |||| || || || |||||||||||||||||| Sbjct 2962506 TTCGCCTGCAGCAACTTGGCGTCCGTCTTGCCCGCCACGAACCACAGCAGCTCC 2962559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340103926696479