Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq61 104 2e-17 seq5 102 7e-17 seq1 102 7e-17 seq119 93.3 4e-14 >seq61 Length=22324452 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||| || || || ||| |||||| || |||||||| || | Sbjct 4253770 ACCACCACGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 4253711 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || | || || |||||||||||||||| ||| || | || | |||||||||||| | Sbjct 4253710 CAGAGTGCGGC-CGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGG 4253652 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||||| ||| || || ||||| | | | ||||| || | || |||| Sbjct 4253651 GAATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCA 4253592 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || |||||||| |||||||| || || ||||| Sbjct 4253591 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 4253543 >seq5 Length=900 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| |||||| || |||||||| || | || || |||| ||| Sbjct 374 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 315 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| || | || |||||||||||||| || | | ||||||||| Sbjct 314 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 255 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||| | | |||||||||| | ||| ||| | || ||||| || Sbjct 254 ATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTTG 195 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||||| ||||| || |||||||| Sbjct 194 CCGGTCAGAGTCTTCACGAAGATCTGCAT 166 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| |||||| || |||||||| || | || || |||| ||| Sbjct 830 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 771 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| || | || |||||||||||||| || | | ||||||||| Sbjct 770 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 711 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||| | | |||||||||| | ||| ||| | || ||||| || Sbjct 710 ATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTTG 651 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||||| ||||| || |||||||| Sbjct 650 CCGGTCAGAGTCTTCACGAAGATCTGCAT 622 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || || || ||| |||||| || |||||||| || | || || |||| ||| Sbjct 602 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 543 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| || | || |||||||||||||| || | | ||||||||| Sbjct 542 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 483 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||| | | |||||||||| | ||| ||| | || ||||| || Sbjct 482 ATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTTG 423 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||||| ||||| || |||||||| Sbjct 422 CCGGTCAGAGTCTTCACGAAGATCTGCAT 394 >seq1 Length=21770863 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| |||||| || |||||||| || | || || |||| ||| Sbjct 2175870 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 2175929 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| || | || |||||||||||||| || | | ||||||||| Sbjct 2175930 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 2175989 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||| | | |||||||||| | ||| ||| | || ||||| || Sbjct 2175990 ATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTTG 2176049 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||||| ||||| || |||||||| Sbjct 2176050 CCGGTCAGAGTCTTCACGAAGATCTGCAT 2176078 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || || || ||| |||||| || |||||||| || | || || |||| ||| Sbjct 2175642 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCC 2175701 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| || | || |||||||||||||| || | | ||||||||| Sbjct 2175702 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 2175761 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||| | | |||||||||| | ||| ||| | || ||||| || Sbjct 2175762 ATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTTG 2175821 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||||| ||||| || |||||||| Sbjct 2175822 CCGGTCAGAGTCTTCACGAAGATCTGCAT 2175850 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| |||||| || || ||||| || | || || |||||||| Sbjct 2176098 ACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGTCCGTCCTCC 2176157 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | |||||| ||| || | || |||||||||||||| || | | ||||||||| Sbjct 2176158 AACTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 2176217 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||| | | |||||||||| | ||| ||| | || ||||| || Sbjct 2176218 ATCTTAGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAAGTGATGGTCTTG 2176277 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || ||||| ||||| ||||| Sbjct 2176278 CCAGTGAGGGTCTTCACGAAAATTTGCAT 2176306 >seq119 Length=24197627 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTC 48576 || || ||||| || |||||| || |||||||| |||| | | || || | ||||| Sbjct 4461635 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTG-CGTCCATCCTC 4461693 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| || | || | |||||||||||| || | | ||||| ||| Sbjct 4461694 GAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTG 4461753 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||| | | | | |||||||||| || |||| ||| | || ||||| || Sbjct 4461754 AATCTTGGCCTTCACATTCTCAATGGTATCGGAAGGCTCCACCTCCAAAGTGATGGTCTT 4461813 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | || |||||||| |||||||| Sbjct 4461814 TCCAGTCAAGGTCTTCACAAAGATCTGCAT 4461843 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| || |||||| || ||||||||||| | || || |||| ||| Sbjct 4459804 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCC 4459863 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 || ||||| ||| || | || | |||||||||||| || | | ||||| ||| | Sbjct 4459864 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGA 4459923 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | | | ||||| || | | ||| ||| | || ||||| || Sbjct 4459924 ATCTTGGCCTTCACATTCTCAATGGTGTCCGACGGCTCAACCTCCAAAGTGATGGTCTTT 4459983 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||||| ||||| || |||||||| Sbjct 4459984 CCGGTCAGAGTCTTCACGAAGATCTGCAT 4460012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421209496526123