Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq61 125 4e-24 seq104 123 1e-23 seq1 114 7e-21 >seq61 Length=22324452 Score = 125 bits (138), Expect = 4e-24 Identities = 82/90 (91%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||||||| | ||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 16695691 AAAAAATCAAGT-GGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 16695633 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTCG 11533 ||||| |||||||||||||||||||| ||| Sbjct 16695632 GCTCTAACCAACTGAGCTAATGGGCCTTCG 16695603 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 20423631 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 20423690 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 20423691 CTGAGCTAATGGGCC 20423705 >seq104 Length=21139217 Score = 123 bits (136), Expect = 1e-23 Identities = 79/87 (91%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || |||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 7633502 AAAAAAGCATATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 7633561 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| |||| |||||||||||||||| Sbjct 7633562 GCTCTAACCAGCTGAGCTAATGGGCCG 7633588 Score = 118 bits (130), Expect = 6e-22 Identities = 79/89 (89%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| ||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 7641239 AACAAAAAATGTTGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 7641298 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 7641299 GACGCTCTAACCAACTGAGCTAATGGGCC 7641327 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | || |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 7642710 AAAAAAACCAACTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 7642651 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| ||||||||||||||| Sbjct 7642650 GCTCTAACCAGCTGAGCTAATGGGCC 7642625 Score = 114 bits (126), Expect = 7e-21 Identities = 79/90 (88%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| ||| |||| |||||||||| |||||||||| |||||||||||||||||||| Sbjct 7639480 TAAAAAAGAATCGTCGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 7639539 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 7639540 CGACGCTCTAACCAACTGAGCTAATGGGCC 7639569 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| | |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 7639780 AATAAAAAAGAATCCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 7639839 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| ||||||||||||||| Sbjct 7639840 GACGCTCTAACCAGCTGAGCTAATGGGCC 7639868 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||| || || |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 7640544 AACAAAATATAAATCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 7640603 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| ||||||||||||||| Sbjct 7640604 GACGCTCTAACCAGCTGAGCTAATGGGCC 7640632 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 13566094 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 13566153 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 13566154 TGAGCTAATGGGCC 13566167 >seq1 Length=21770863 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 20274637 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 20274696 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 20274697 TGAGCTAATGGGCCG 20274711 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261465312616348