Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27]
8,123 sequences; 165,709,965 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq61 125 4e-24
seq104 123 1e-23
seq1 114 7e-21
>seq61
Length=22324452
Score = 125 bits (138), Expect = 4e-24
Identities = 82/90 (91%), Gaps = 1/90 (1%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||||||| | ||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 16695691 AAAAAATCAAGT-GGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 16695633
Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTCG 11533
||||| |||||||||||||||||||| |||
Sbjct 16695632 GCTCTAACCAACTGAGCTAATGGGCCTTCG 16695603
Score = 114 bits (126), Expect = 7e-21
Identities = 70/75 (93%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 20423631 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 20423690
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||||||||
Sbjct 20423691 CTGAGCTAATGGGCC 20423705
>seq104
Length=21139217
Score = 123 bits (136), Expect = 1e-23
Identities = 79/87 (91%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||| || |||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 7633502 AAAAAAGCATATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 7633561
Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530
||||| |||| ||||||||||||||||
Sbjct 7633562 GCTCTAACCAGCTGAGCTAATGGGCCG 7633588
Score = 118 bits (130), Expect = 6e-22
Identities = 79/89 (89%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| ||||||| ||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 7641239 AACAAAAAATGTTGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 7641298
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||||||||
Sbjct 7641299 GACGCTCTAACCAACTGAGCTAATGGGCC 7641327
Score = 116 bits (128), Expect = 2e-21
Identities = 77/86 (90%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||| | || |||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 7642710 AAAAAAACCAACTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 7642651
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| |||| |||||||||||||||
Sbjct 7642650 GCTCTAACCAGCTGAGCTAATGGGCC 7642625
Score = 114 bits (126), Expect = 7e-21
Identities = 79/90 (88%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499
||| ||| |||| |||||||||| |||||||||| ||||||||||||||||||||
Sbjct 7639480 TAAAAAAGAATCGTCGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 7639539
Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||| ||||||||||||||||||||
Sbjct 7639540 CGACGCTCTAACCAACTGAGCTAATGGGCC 7639569
Score = 113 bits (124), Expect = 2e-20
Identities = 78/89 (88%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
||||||||| | |||||||||| |||||||||| |||||||||||||||||||||
Sbjct 7639780 AATAAAAAAGAATCCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 7639839
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| |||| |||||||||||||||
Sbjct 7639840 GACGCTCTAACCAGCTGAGCTAATGGGCC 7639868
Score = 113 bits (124), Expect = 2e-20
Identities = 78/89 (88%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| |||| || || |||||||||| |||||||||| |||||||||||||||||||||
Sbjct 7640544 AACAAAATATAAATCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 7640603
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| |||| |||||||||||||||
Sbjct 7640604 GACGCTCTAACCAGCTGAGCTAATGGGCC 7640632
Score = 113 bits (124), Expect = 2e-20
Identities = 69/74 (93%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 13566094 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 13566153
Query 11516 TGAGCTAATGGGCC 11529
||||||||||||||
Sbjct 13566154 TGAGCTAATGGGCC 13566167
>seq1
Length=21770863
Score = 114 bits (126), Expect = 7e-21
Identities = 70/75 (93%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 20274637 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 20274696
Query 11516 TGAGCTAATGGGCCG 11530
|||||||||||||||
Sbjct 20274697 TGAGCTAATGGGCCG 20274711
Lambda K H
0.639 0.410 0.921
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261465312616348
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |