Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq7021 181 2e-41 seq4628 181 2e-41 seq106 181 2e-41 seq7519 167 4e-37 seq7896 158 2e-34 seq7577 154 2e-33 seq473 105 1e-18 >seq7021 Length=914 Score = 181 bits (200), Expect = 2e-41 Identities = 201/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | ||||| |||||||||||||| ||||| ||||| ||||| Sbjct 657 CGCCAAGCGTCATCGCAAAGTGCTTCGTGATAACATCCAAGGTATCACGAAGCCTGCTAT 598 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| ||||||||||||| || || ||||| | |||||| | | || || || | Sbjct 597 CCGCCGTTTGGCTCGTCGTGGCGGTGTGAAGCGCATATCTGGACTCATATACGAGGAAAC 538 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| ||||| | ||| | ||| ||| || | |||||| || ||| ||||| Sbjct 537 GCGTGGTGTTCTGAAGGTTTTCTTGGAGAACGTAATTCGTGATGCCGTCACCTACACCGA 478 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| | |||||||| || |||||||| | || || || |||| | ||||| Sbjct 477 ACACGCTAAGAGAAAGACTGTTACAGCCATGGATGTTGTGTACGCTCTGAAGAGGCAAGG 418 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || ||||| ||||| Sbjct 417 CCGCACTCTCTACGGATTTGGCGGTTAA 390 >seq4628 Length=1065 Score = 181 bits (200), Expect = 2e-41 Identities = 201/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | ||||| |||||||||||||| ||||| ||||| ||||| Sbjct 141 CGCCAAGCGTCATCGCAAAGTGCTTCGTGATAACATCCAAGGTATCACGAAGCCTGCTAT 200 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| ||||||||||||| || || ||||| | |||||| | | || || || | Sbjct 201 CCGCCGTTTGGCTCGTCGTGGCGGTGTGAAGCGCATATCTGGACTCATATACGAGGAAAC 260 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| ||||| | ||| | ||| ||| || | |||||| || ||| ||||| Sbjct 261 GCGTGGTGTTCTGAAGGTTTTCTTGGAGAACGTAATTCGTGATGCCGTCACCTACACCGA 320 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| | |||||||| || |||||||| | || || || |||| | ||||| Sbjct 321 ACACGCTAAGAGAAAGACTGTTACAGCCATGGATGTTGTGTACGCTCTGAAGAGGCAAGG 380 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || ||||| ||||| Sbjct 381 CCGCACTCTCTACGGATTTGGCGGTTAA 408 >seq106 Length=1286 Score = 181 bits (200), Expect = 2e-41 Identities = 201/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | ||||| |||||||||||||| ||||| ||||| ||||| Sbjct 258 CGCCAAGCGTCATCGCAAAGTGCTTCGTGATAACATCCAAGGTATCACGAAGCCTGCTAT 317 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| ||||||||||||| || || ||||| | |||||| | | || || || | Sbjct 318 CCGCCGTTTGGCTCGTCGTGGCGGTGTGAAGCGCATATCTGGACTCATATACGAGGAAAC 377 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| ||||| | ||| | ||| ||| || | |||||| || ||| ||||| Sbjct 378 GCGTGGTGTTCTGAAGGTTTTCTTGGAGAACGTAATTCGTGATGCCGTCACCTACACCGA 437 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| | |||||||| || |||||||| | || || || |||| | ||||| Sbjct 438 ACACGCTAAGAGAAAGACTGTTACAGCCATGGATGTTGTGTACGCTCTGAAGAGGCAAGG 497 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || ||||| ||||| Sbjct 498 CCGCACTCTCTACGGATTTGGCGGTTAA 525 >seq7519 Length=1199 Score = 167 bits (184), Expect = 4e-37 Identities = 200/268 (75%), Gaps = 3/268 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | ||||| |||| ||||||||| ||||| |||| ||||| Sbjct 26 CGCCAAGCGTCATCGCAAAGTGCTTCGTGATA-CATCCAAGGTATCACGAAGCT-GCTAT 83 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| ||||||||||||| || || ||||| | |||||| | | || || || | Sbjct 84 CCGCCGTTTGGCTCGTCGTGGCGGTGTGAAGCGCATATCTGGACTCATATACGAGGAAAC 143 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| ||||| | ||| | ||| ||| || | |||||| || ||| ||||| Sbjct 144 GCGTGGTGTTCTGAAGGTTTTCTTGGAGAACGTAAT-CGTGATGCCGTCACCTACACCGA 202 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| | ||||||||||| |||||||| | || || || |||| | ||||| Sbjct 203 ACACGCTAAGAGAAAGACTGTCACAGCCATGGATGTTGTGTACGCTCTGAAGAGGCAAGG 262 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || ||||| ||||| Sbjct 263 CCGCACTCTCTACGGATTTGGCGGTTAA 290 >seq7896 Length=1508 Score = 158 bits (174), Expect = 2e-34 Identities = 179/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| ||||| ||||| |||||||| ||| ||||||||||||| || || Sbjct 1160 GATAACATCCAAGGTATCACGAAGCCTGCTATCCGCCGTTTGGCTCGTCGTGGCGGTGTG 1101 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| | |||||| | | || || || | |||| |||| ||||| | ||| | || Sbjct 1100 AAGCGCATATCTGGACTCATATACGAGGAAACGCGTGGTGTTCTGAAGGTTTTCTTGGAG 1041 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | |||||| || ||| ||||| |||||||| | |||||||| || || Sbjct 1040 AACGTAATTCGTGATGCCGTCACCTACACCGAACACGCTAAGAGAAAGACTGTTACAGCC 981 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || || || |||| | |||||||| | | || || ||||| ||||| Sbjct 980 ATGGATGTTGTGTACGCTCTGAAGAGGCAAGGCCGCACTCTCTACGGATTTGGCGGTTAA 921 >seq7577 Length=1150 Score = 154 bits (170), Expect = 2e-33 Identities = 197/266 (74%), Gaps = 4/266 (2%) Strand=Plus/Plus Query 16436 AAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGA-ATCACCAAGCCA-GCTATCC 16493 ||||||||||||| | ||||| |||||||| ||||| ||||| ||||| ||||||| Sbjct 113 AAGCGTCATCGCAAAGTGCTTCGTGATAACATTCAAGGGTATCACGAAGCCTTGCTATCC 172 Query 16494 GTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTC 16553 || || ||||||||||||| || || ||||| | |||||| | | || || || | | Sbjct 173 GT-GT-TGGCTCGTCGTGGCGGTGTGAAGCGCATATCTGGACTCATATACGAGGAAACGC 230 Query 16554 GTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGC 16613 ||| |||| ||||| | ||| | ||| ||| || | |||||| || ||| ||||| | Sbjct 231 GTGGTGTTCTGAAGGTTTTCTTGGAGAACGTAATTCGTGATGCCGTCACCTACACCGAAC 290 Query 16614 ACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCC 16673 ||||||| | |||||||| || |||||||| | || || || |||| | ||||||| Sbjct 291 ACGCTAAGAGAAAGACTGTTACAGCCATGGATGTTGTGTACGCTCTGAAGAGGCAAGGCC 350 Query 16674 GTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || || ||||| ||||| Sbjct 351 GCACTCTCTACGGATTTGGCGGTTAA 376 >seq473 Length=28832112 Score = 105 bits (116), Expect = 1e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | ||||| ||||||||||| || ||||||||||| ||||| Sbjct 15982025 CGCCAAGCGTCATCGTAAGGTGCTTCGTGATAACATCCAGGGTATCACCAAGCCTGCTAT 15981966 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||| ||||| ||||| || |||||| ||||||| ||| | || || || | Sbjct 15981965 TCGCCGCTTGGCCCGTCGCGGTGGTGTGAAGCGTATCTCTGGCTTGATTTACGAGGAAAC 15981906 Query 16552 TCGTGATGTTTTGAAG 16567 ||| | ||| ||||| Sbjct 15981905 TCGCGGTGTGCTGAAG 15981890 Score = 80.6 bits (88), Expect = 4e-11 Identities = 95/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 16571 TTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACT 16630 ||||| ||| |||||||| ||| ||| || ||| ||||||||||| || || ||||| Sbjct 15981821 TTCCTTGAGAACGTTATCCGTGACGCTGTCACCTACACCGAGCACGCCAAGCGCAAGACC 15981762 Query 16631 GTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTT 16690 || ||| ||||||| | || ||||| | || || || || || | | || |||||| Sbjct 15981761 GTGACCGCCATGGACGTGGTTTATGCCCTCAAGCGCCAGGGACGCACCCTCTACGGTTTT 15981702 Query 16691 GGAAGTTAA 16699 || ||||| Sbjct 15981701 GGCGGTTAA 15981693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79067773084239