Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq61 322 6e-83 seq104 196 6e-45 >seq61 Length=22324452 Score = 322 bits (356), Expect = 6e-83 Identities = 1200/1869 (64%), Gaps = 24/1869 (1%) Strand=Plus/Plus Query 61985 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62044 ||||| || ||||| ||||||| | | || || || || || |||||||||||||| Sbjct 13004065 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTGCGCAGATAGTACATTCC 13004124 Query 62045 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62104 ||||| ||||| |||| ||| || || || || ||||| || | || Sbjct 13004125 GGTTTTGAGACCAGCTTTCCAGGAGTAGAAGTGTATGGAGGTCAGTTTTCCGTAGTTTGG 13004184 Query 62105 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62164 ||||| | ||| || || | || ||||| ||||| |||||||| || | || || || Sbjct 13004185 CTCTGCCACATGAATGTTGAATGACTGACTCTGATCTATGAAGGCACCACGATCGGCGGC 13004244 Query 62165 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 62223 |||||| || | | ||| || |||||||| | || || || | |||| | | Sbjct 13004245 CATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTAGAGATCGCGAACCTT 13004304 Query 62224 CTTCTGGAAGGTTTGTAT--TCTGAATGGATCCACCATCTGCC-ATAATCCTATTCTTGA 62280 || ||| || | || | || || || || || ||| || ||| ||||| | Sbjct 13004305 CTGGGGGATGGCCTCGATGTTTTGGATTGAGCC-CCGGCTGGATATGATCTGGTTCTTCA 13004363 Query 62281 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 62340 | || || | ||| || | |||||||| | | || | ||| | || || || | Sbjct 13004364 TGTCGTCGTCCCACAAGTCCAGCTCGGTTAGGTCGCGCAGCAAATGATGGTTGACCACCT 13004423 Query 62341 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACT 62400 ||||||| || |||| |||| || ||||| || || ||||||| || || | || | Sbjct 13004424 GAAATTCGCCGGACAGAACTCGCCTGGTGTATATGTTCGTGGTATAGGGCTCGAAGGATT 13004483 Query 62401 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62460 |||| || |||| ||| ||||| || || ||||| ||||| || || |||| | | Sbjct 13004484 CATTGTTGCCCATAATCTGAGCTGTGGAAGCAGTGGGCATCGGAGCAACCAGCAGGGAGT 13004543 Query 62461 TTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 62519 | | | |||| || | |||| || || || | ||| | ||| || | || Sbjct 13004544 TCCGGACGCCGTGCTGCT-TGATGGACTCCTTCAGTTTCTGCCAGTCCCAGAGGTTCGTT 13004602 Query 62520 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 62578 || || || | ||| || || || | | | ||| | || Sbjct 13004603 GGGACCTTGTCCCACATGTCGTACTGCAAAATTCCCTTGCTCACCGGGCTGCCCT-CGTA 13004661 Query 62579 TGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATA 62638 || |||||||| || || || || |||||||| || || || || || || || || Sbjct 13004662 GGTTTCGTATGGACCCTCAGCCTGGGCCAGTTCACAGCTGGCTTCCAAGGCGCCATAGTA 13004721 Query 62639 AATGGTTTCGAAGATCTTCTTATTTA---GATCTTGTGCTTCCAGGCTATCAAATGGATA 62695 |||||||||||| |||| || ||| | || | | |||| || ||| |||| | Sbjct 13004722 AATGGTTTCGAAAATCTGCTGATTCAACAGACCGGCTTCTTCA---CTCTCATATGGGAA 13004778 Query 62696 ATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62755 | ||| || | |||||| || ||||| ||||||||||| || | || | || || Sbjct 13004779 TCGCATGAGGATCAGCGCGTCAGCGAATCCCTGAACACCAATGCCAACGGGACGGTGCCT 13004838 Query 62756 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 62815 | ||| || | | || ||||| | |||||||| || ||||| ||||| || || || Sbjct 13004839 CAAATTGGACTTCTTTGCCTCTGGCAGGGGATAATAGTTGATATCAATAATCTTGTTAAG 13004898 Query 62816 ATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC--- 62872 |||| | || || ||| || ||||| || || |||||| | | || Sbjct 13004899 ATTTTTTGTAACTATCTTGGTGACTTCCTTTAGCTTCTTGAAATCATACGTCTTCTCCGG 13004958 Query 62873 TATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATC 62932 | | ||||||||||| | ||| | ||||| || || || || |||| ||||| | | Sbjct 13004959 TGTGACAAACATGTTGAGGGCGATGGATGCAAGGTTGCAGACTGCTATCTCATCCGGCGC 13005018 Query 62933 CGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTG 62992 | |||| | || || ||||| | || || |||||||| || || | ||| || || Sbjct 13005019 GGAGTATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCAACATTCTGCTG 13005078 Query 62993 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTG 63052 ||| ||||| |||| ||||| ||||| | || ||| | ||| | |||||||| | || Sbjct 13005079 ATTGCTCTTCCTGTTGCACGCGTCCTTGAAGAGCATGTACGGATTTCCAGTTTCCACTTG 13005138 Query 63053 AGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA-TTATAGATTTGTATCTCCTTT 63111 | || || || || ||| | | | ||||||| | | | || | | || | Sbjct 13005139 CGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGGCACGACCCTC 13005198 Query 63112 CTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAG 63171 || |||||| ||||| |||||| || || ||||| |||| | | |||| Sbjct 13005199 CT-GCTCGTATTTCTCATACAGCTTTTCGAATTCATCGCCCCACACATCTTGGAGGCCAG 13005257 Query 63172 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63231 | |||| | || ||||| | |||||| || || | ||| ||| |||||||| |||| Sbjct 13005258 GGCATTTGTGGGGGCACATGAGCGACCAATCGCCATTGGCCTCCACGCGTTTCATGAAGA 13005317 Query 63232 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 63291 |||| || ||||| || || ||| ||||| | || | || || || || || || | Sbjct 13005318 GATCGGGTATCCACAGGGCGTAAAAGAGATCGCGGGCGCGATTCTCTTCCTTGCCAGTGT 13005377 Query 63292 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63351 | || || || || |||||| | | | ||| || ||||| ||||||| ||| ||||| | Sbjct 13005378 TTTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAAGGTTCCAGGTAAATGGCAA 13005437 Query 63352 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63411 | || || || ||| ||||||||||| | || | || || || | || | Sbjct 13005438 AGGCACCGGGACGCTTGCCGCCTCCCTGATCCACATAACGCGCCACATTGTTGAAGACCC 13005497 Query 63412 TCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGG 63471 ||| ||| |||| | || || || | || || || || | || || | || | | Sbjct 13005498 TCAGCATGGGAACCAACCCATTGGACGTTCCGTTTGTGCCACAAATGGAGGTGCCCTTTG 13005557 Query 63472 CACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63529 ||||||| | | | ||| || || || || || || || ||||| | ||||| Sbjct 13005558 CACGAATGCAATGCACGTTG--AGGCCGATGCCACCAGCAGACTTGGAGATCATAGCGCA 13005615 Query 63530 TCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACA 63589 | | | | | | || ||||| ||| || | ||||| | || || ||||| Sbjct 13005616 CTGCTCCACAGACTTGAATATGCCCTCGATGGAGTCGGCAGTCATGGTCAGCAGGAAACA 13005675 Query 63590 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63649 |||| || |||| | || | || ||| | || || || || ||||| || Sbjct 13005676 CGACGACAGCTGCGGACGGTTTGTGGCAGCGGCAAACAGCGTGGGCGATGCATGCGTGAA 13005735 Query 63650 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63709 | || || || |||||||| || || | || | || || ||| | ||| || Sbjct 13005736 GTAGCGCTCCGAGAGGAGATTGTAGGTTTCCACGGCCGCATCAATGTCCTCTCCATGGAT 13005795 Query 63710 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63769 ||| | || || ||||| | ||||||||| |||| || ||||||| |||| | || Sbjct 13005796 TCCGATCGCCACGCGCATCAGCATGTGCTGTGGTCGCTCGGCGATCTTTCCGTTTCTCTT 13005855 Query 63770 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63829 | || ||||| |||| || ||||| ||||||||||| || |||||| || || Sbjct 13005856 GAGCAGATAGGAGCGCTCCAGGGTCTTAAAGCCAAAATAGTTATAGCCAAAGTCACGATC 13005915 Query 63830 GTAAATAAT 63838 || || || Sbjct 13005916 ATAGATTAT 13005924 >seq104 Length=21139217 Score = 196 bits (216), Expect = 6e-45 Identities = 489/736 (66%), Gaps = 15/736 (2%) Strand=Plus/Minus Query 33004 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33063 |||||||| ||||| || ||||| ||| || ||||| || || ||||| |||| Sbjct 9083990 ACTCCCATGCGCTGGTACTCTCCCACCTTTTTCTCAAAAAAGTTGGTCTTTCCATCCAGC 9083931 Query 33064 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 33123 ||||| | |||||||| | || || || | || || || || || ||||| Sbjct 9083930 GATATCATCTCCATGAAGTTGAAGGGGTTCTTGGTGTTGTAGATCTTCCCAACGCCCAAC 9083871 Query 33124 TCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33183 || || ||| | |||||| ||||| ||||| || ||||| ||||||||||| Sbjct 9083870 TCCACAAGCAAACGATCCGCCACGAACTCTATGTACTGGGACATCAGGTCACAATTCATG 9083811 Query 33184 CCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCT 33243 || || | ||||| || || || | || || ||||| || ||||| | || || || Sbjct 9083810 CCGATTAAATTAACAGGCAGGGCATCGGTGAGGAATTCCTGCTCAATCGCCACTGCGTCG 9083751 Query 33244 GTTATAATAGATCTAACGGTTTCT-TCACTC---GGTGGATGCAATAAATGTTTAAACAT 33299 || ||||| | | | || | | ||| | |||| | || | ||||| Sbjct 9083750 CGGAT----GATCTCGATGATGCGCTCGCGCTTGGGTCGCTGCACCAGGTGCTGGAACAT 9083695 Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 || || || |||||||||| |||||||| | | || || |||||||| || || Sbjct 9083694 CAGCACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGT 9083635 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAA--TGATCCAGAA 33417 ||||| ||||| || || ||||| |||||||| || || || ||||| || | ||| Sbjct 9083634 CAGTCCAGGCATAAGACCGCGCTTCTTAAGCCAGAAAATAGAGGCGAAGCTGCCGCTGAA 9083575 Query 33418 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--CTGT 33475 || |||| || || || || |||||||| || | | ||| ||| || ||| || Sbjct 9083574 AA--AGATGCCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCAAAATTGGCCGACTTA 9083517 Query 33476 CATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33534 | | | |||| | ||||| || ||||| || ||| ||||||||||| || Sbjct 9083516 GAGGAAATCCAGGAAAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCAATA 9083457 Query 33535 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33594 || || || || || | | | | ||| | ||||| ||||||| | ||| Sbjct 9083456 GCGTTGAACAGGTACTCTCGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAGCACACTG 9083397 Query 33595 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33654 ||||| ||||| || | ||| || ||||| |||||||| |||||||| || | ||||| Sbjct 9083396 TACATCTCCGAGTGCACGTTCTCCATGGCAATCTGAAAGCCGTAGAAGCAGCGTGCCTCT 9083337 Query 33655 GTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTG 33714 || ||||| || || || || |||||| ||| ||| || || || || || || | Sbjct 9083336 GTGATCTGCACCTCCTGACTGAAGCGTTCCACCAGATTCTCGTTTACGATGCCATCGGAG 9083277 Query 33715 GCTGCAAAAAACGCCA 33730 || || || || |||| Sbjct 9083276 GCGGCGAAGAAGGCCA 9083261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622883947498680