Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq61 246 8e-60 >seq61 Length=22324452 Score = 246 bits (272), Expect = 8e-60 Identities = 1106/1731 (64%), Gaps = 41/1731 (2%) Strand=Plus/Minus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || || || ||||| ||| | ||||| || || || || |||||| | ||| ||||| Sbjct 13005834 GAGCGACCACAGCACATGCTGATGCGCGTGGCGATCGGAATCCATGGAGAGGACATTGAT 13005775 Query 363508 GCCGCGATTGAAACATATAAGCT--TCTAAGTGCTCGTGTA-TTCACGCACGCCACGCCA 363564 || || | ||||| || || || ||| | || | || |||||||| || |||| Sbjct 13005774 GCGGCCGTGGAAACCTACAATCTCCTCTCGGAGCGC---TACTTCACGCATGCATCGCCC 13005718 Query 363565 ACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATG 363624 || ||| |||| || ||| ||| |||| || || || || || | ||| Sbjct 13005717 ACGCTGTTTGCCGCTGCCACAAACCGTCCGCAGCTGTCGTCGTGTTTCCTGCTGACCATG 13005658 Query 363625 AAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAG 363684 | | ||| ||||||||||| || || | | | || | || ||| | || |||||| Sbjct 13005657 ACTGCCGACTCCATCGAGGGCATATTCAAGTCTGTGGAGCAGTGCGCTATGATCTCCAAG 13005598 Query 363685 AATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCG 363743 ||| || || || || | | || | || |||||||| || || | |||| | Sbjct 13005597 TCTGCTGGTGGCATCGGCCTCAACG-TGCATTGCATTCGTGCAAAGGGCACCTCCATTTG 13005539 Query 363744 CGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGC 363803 |||||| ||| || |||||| ||||||||||||| | || || ||||| || Sbjct 13005538 TGGCACAAACGGAACGTCCAATGGGTTGGTTCCCATGCTGAGGGTCTTCAACAATGTGGC 13005479 Query 363804 GAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCC 363863 | | || || || ||||| || || ||||| || || ||||| || || || || || Sbjct 13005478 GCGTTATGTGGATCAGGGAGGCGGCAAGCGTCCCGGTGCCTTTGCCATTTACCTGGAACC 13005419 Query 363864 TCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATT 363923 | || | ||| | |||||||| || || || ||||||||| || || || || Sbjct 13005418 TTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAAAACACTGGCAAGGAAGAGAA 13005359 Query 363924 GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983 || || || ||||| || || || || ||| | | || | || ||||| |||||||| Sbjct 13005358 TCGCGCCCGCGATCTCTTTTACGCCCTGTGGATACCCGATCTCTTCATGAAACGCGTGGA 13005299 Query 363984 GGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATG 364043 ||| | ||||||| ||| | ||||| ||| |||| || || || ||||| || Sbjct 13005298 GGCCAATGGCGATTGGTCGCTCATGTGCCCCCACAAATGCCCTGGCCTCCAAGATGTGTG 13005239 Query 364044 GGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGAC 364103 ||| || || | | || || || || || || |||||| || || Sbjct 13005238 GGGCGATGAATTCGAAAAGCTGTATGAGAAATACGAGCAGGAGGGTCGTGCCAACCGAAC 13005179 Query 364104 AATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACC 364163 || || || || |||||||||||||| || |||| | || || |||| || Sbjct 13005178 GGTTAAGGCTCAATCCCTGTGGTTTGCCATCATTGAGGCGCAAGTGGAAACTGGAAATCC 13005119 Query 364164 CTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223 || ||| | | ||| || |||||||| | ||| ||| |||||| | |||| || || Sbjct 13005118 GTACATGCTCTTCAAGGACGCGTGCAACAGGAAGAGCAATCAGCAGAATGTTGGCACCAT 13005059 Query 364224 TCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGT 364283 || |||||| | || || || || |||||||| |||| || || |||| || || Sbjct 13005058 CAAGTGCAGCAACTTGTGCACGGAAATCGTTGAATACTCCGCGCCGGATGAGATAGCAGT 13004999 Query 364284 ATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAA---GATGGTACTTTTGACCA 364340 || |||||||| || ||||| || |||||| | | || || | ||| Sbjct 13004998 CTGCAACCTTGCATCCATCGCCCTCAACATGTTTGTCACACCGGAGAAGACGTATGATTT 13004939 Query 364341 CCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAA 364400 | || | || | || || ||| | | ||| ||||| ||||| |||| || | Sbjct 13004938 CAAGAAGCTAAAGGAAGTCACCAAGATAGTTACAAAAAATCTTAACAAGATTATTGATAT 13004879 Query 364401 GAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCT 364460 || |||||||| | || || || || || ||| || | || || || |||| | Sbjct 13004878 CAACTATTATCCCCTGCCAGAGGCAAAGAAGTCCAATTTGAGGCACCGTCCCGTTGGCAT 13004819 Query 364461 TGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAG---ATGGCATTTGATTCGCC 364517 |||||| ||||| ||||||||| |||| |||| | | ||| ||| Sbjct 13004818 TGGTGTTCAGGGATTCGCTGACG---CGCTGATCCTCATGCGATTCCCATATGAGAGTGA 13004762 Query 364518 TGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGC 364577 || || || | | ||| || |||| || ||||| || || | || ||| || || Sbjct 13004761 AGAAGCCGGTCTGTTGAATCAGCAGATTTTCGAAACCATTTACTATGGCGCCTTGGAAGC 13004702 Query 364578 TTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTC 364637 ||||| |||| | | |||| ||| || || ||||| ||| | Sbjct 13004701 CAGCTGTGAACTGGCCCAGGCTGAGGGTCCATACGAAACCTACGAGGGCAGCCCGGTGAG 13004642 Query 364638 GCAGGGAAAATTCCAGTTTGATCTATGG---AATGTCACGCCATCTGTCCGATGGAACTG 364694 |||||| || |||| || | ||| || ||| ||| | || ||| |||| Sbjct 13004641 CAAGGGAATTTTGCAGTACGACATGTGGGACAAGGTC---CCAACGAACCTCTGGGACTG 13004585 Query 364695 GGATACGCT-ACG--TTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGC 364751 | | | || | | |||| | ||| |||| || || |||||||| | || Sbjct 13004584 GCAGAAACTGAAGGAGTCCA---TCAAGCAGCACGGCGTCCGGAACTCCCTGCTGGTTGC 13004528 Query 364752 GCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTT 364811 || |||||||| ||||| || || ||||| | || ||||| || | |||||| || | Sbjct 13004527 TCCGATGCCCACTGCTTCCACAGCTCAGATTATGGGCAACAATGAATCCTTCGAGCCCTA 13004468 Query 364812 TACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTA 364871 ||| | || | || | | || ||||| ||||| ||||||| ||| || || | | Sbjct 13004467 TACCACGAACATATACACCAGGCGAGTTCTGTCCGGCGAATTTCAGGTGGTCAACCATCA 13004408 Query 364872 CCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCAT 364931 | | || || |||| | | |||||| ||| |||||||||| | ||||| Sbjct 13004407 TTTGCTGCGCGACCTAACCGAGCTGGACTTGTGGGACGACGACATGAAGAACCAGATCAT 13004348 Query 364932 CGCCGCTAATGGTTCTGTGCAGAACATTCCAGG--AT-TTCCAGAAGATCTGAAGCCTAT 364988 || || || | || |||| || ||| || ||||||| | | | | Sbjct 13004347 ATCCAGCCGGGGCTCAATCCAAAACA-TCGAGGCCATCCCCCAGAAGGTTCG--CGATCT 13004291 Query 364989 TTACAAAACCGTATGGGAAATTTCCATGCGAACTCTC-ATTGATATGGCGGCCGATCGCG 365047 ||||| || || |||||||| | || | | | | ||| | ||||| |||||||| | Sbjct 13004290 CTACAAGACGGTGTGGGAAATCT-CAGTCAAGTCCACGATTAAAATGGCCGCCGATCGTG 13004232 Query 365048 GTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA--TGACTCAGCCAACCTCCGC 365105 |||| || || |||||| ||||| || ||| ||||| || | |||||| || || Sbjct 13004231 GTGCCTTCATAGATCAGAGTCAGTCATTCAAC--ATTCATGTGGCAGAGCCAAACTACGG 13004174 Query 365106 CAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 || || || ||||| || |||||| |||||| | ||||| || || || Sbjct 13004173 AAAACTGACCTCCATACACTTCTACTCCTGGAAAGCTGGTCTCAAAACCGG 13004123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303217952252186