Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq67 86.0 5e-12 seq61 86.0 5e-12 seq119 84.2 2e-11 >seq67 Length=2158 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | |||||| |||||| ||||||||||| || ||||| ||||| Sbjct 1001 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 1060 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || |||||||| || ||||||| | | | | || || |||||| Sbjct 1061 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAC 1120 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || || || || | || || ||| Sbjct 1121 ATTCAGAAGGAGTCCACTCTGCACTTGGTG 1150 >seq61 Length=22324452 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | |||||| |||||| ||||||||||| || ||||| ||||| Sbjct 13090534 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 13090593 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || |||||||| || ||||||| | | | | || || |||||| Sbjct 13090594 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAC 13090653 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || || || || | || || ||| Sbjct 13090654 ATTCAGAAGGAGTCCACTCTGCACTTGGTG 13090683 >seq119 Length=24197627 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || || ||||| | || ||| | ||||| ||| | Sbjct 4459349 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCTTCA 4459290 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || ||||| ||||| || || || ||||| ||||| Sbjct 4459289 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAG 4459230 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || |||||||||||| ||||| | | | | | |||||| ||| Sbjct 4459229 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAAC 4459170 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || || || || || |||| || || Sbjct 4459169 ATCCAGAAGGAGTCGACCCTTCACTTGGT 4459141 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || || ||||| | || ||| | ||||| ||| ||| | Sbjct 4460240 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTTGAG-CCATC 4460182 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| ||| | || || ||||| ||||| || || || ||||| ||||| Sbjct 4460181 AGACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCA 4460122 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| | ||||| | || ||||||||||||||| |||| Sbjct 4460121 GCAGCGTCTGATCTTCGCCGGCAAGCAACTCGAGGATG 4460084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || ||||| | || ||| | ||||| ||| ||| | Sbjct 4460608 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATCACCCTGGAAGTTGAG-CCATC 4460550 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| ||| | || || ||||| ||||| || || || ||||| ||||| Sbjct 4460549 AGACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCA 4460490 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | ||||| | || |||||||||||| ||||| | | | | | |||||| || Sbjct 4460489 GCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAA 4460430 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| || || || || || |||| || || Sbjct 4460429 CATCCAGAAGGAGTCGACCCTTCACTTGGT 4460400 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || || ||||| | || ||| | ||||| ||| | Sbjct 4461064 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCTTCA 4461005 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || ||||| ||||| || || || ||||| ||||| Sbjct 4461004 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAG 4460945 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || |||||||||||| ||||| | | | | | |||||| ||| Sbjct 4460944 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAAC 4460885 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || || || || || |||| || || Sbjct 4460884 ATCCAGAAGGAGTCGACCCTTCACTTGGT 4460856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429893436739065