Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq119 96.9 3e-15 seq61 87.8 1e-12 >seq119 Length=24197627 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || |||||||| |||| || ||| |||| Sbjct 4460397 AGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCT 4460456 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| ||| ||||| || | || || ||||| || || ||| | ||||| ||||| Sbjct 4460457 TCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCT 4460516 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||| ||||| ||||| |||||||| Sbjct 4460517 TGGATCTTAGC--CTTCACATTCTCAATGGTGTCTGATGGCTCAACTTCCAGGGTGATGG 4460574 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||||||||| || || || || |||||||| Sbjct 4460575 TCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 4460608 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || |||||||| |||| || ||| |||| Sbjct 4460625 AGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCT 4460684 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| ||| ||||| || | || || ||||| || || ||| | ||||| ||||| Sbjct 4460685 TCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCT 4460744 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||| ||||| ||||| |||||||| Sbjct 4460745 TGGATCTTAGC--CTTCACATTCTCAATGGTGTCTGAAGGCTCAACTTCCAGGGTGATGG 4460802 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||||||||| || || || || |||||||| Sbjct 4460803 TCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 4460836 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||| | || ||| |||||| Sbjct 4459573 AGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGACAGGGT----GCGTCC 4459628 Query 16784 ----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839 |||| ||| ||||| || | || || ||||| || || || | ||||| || Sbjct 4459629 ATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTT 4459688 Query 16840 GTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGAT 16899 || ||| | |||||| | | | ||||| ||||| ||||| |||||| Sbjct 4459689 ATCTTGAATCTTAGCCTTCACATTCTCAATGGTGTCCGACGGCTCAACTTCCAGGGTGAT 4459748 Query 16900 GGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| ||||||||||| || || || || |||||||| Sbjct 4459749 GGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 4459784 >seq61 Length=22324452 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||||| || || | ||||| Sbjct 4253754 AGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCGTCC 4253695 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || ||||| || | || || ||||| || || || | |||||| || || Sbjct 4253694 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCC 4253635 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| |||||| |||| |||||||| Sbjct 4253634 TGGATCTTGGC--CTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGG 4253577 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || ||||| || || || ||||| Sbjct 4253576 TCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 4253543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405047896667770