Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20yakuba_20[refseq_20GCF_5F000005975.2_202006-06-27] 8,123 sequences; 165,709,965 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq61 143 2e-29 seq119 116 3e-21 seq67 91.5 1e-13 >seq61 Length=22324452 Score = 143 bits (158), Expect = 2e-29 Identities = 204/287 (71%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 50989 AACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTCT 51048 || || || || || ||| |||||||| |||| | |||| ||||| || || Sbjct 16381071 AATTTGCGTTTGCATCCCTGATAGTTCATGTACCGAACCTTGCCGAAAATAGCCCGCTCC 16381012 Query 51049 TTGAACGGCCTGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAGGA 51108 || | | | || || || |||| |||||||||||| || |||||||| ||| ||| Sbjct 16381011 TTCCAACCCATATCATGGACGCCGCCAATTGACCACATGCAGCCCACATAGCCGTTGGGA 16380952 Query 51109 TCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGTCT 51168 ||||| ||||||| ||||| | ||||| || | || || || |||| ||| ||| Sbjct 16380951 TCGCGTCCATCCAGACTGTATTTGTCGTTCAGCAGGATCGCGTACTCCAACGCCTCCTCT 16380892 Query 51169 GCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATC 51228 | | | |||||||||| ||| || |||||||||||||| |||| | |||||||| Sbjct 16380891 GGGGTTGCAGTCCATTCCAGAATCTTTTTGGCCCAGTACATCCGCAAAAAGCCGTGCATT 16380832 Query 51229 TTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTC 51275 || ||||||| |||||| ||| ||||||||||| | ||||| Sbjct 16380831 TTTCCCTCGCGCACCAGCTGCAGTTGCGCCGAGTTCCATAGGTCGTC 16380785 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || || || |||| Sbjct 13090474 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 13090533 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || |||||||| |||| |||| || | ||| ||||||||||| ||||| || || Sbjct 13090534 GATACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGA 13090589 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | || || || ||||| || | ||||||| ||||| | || || Sbjct 13090590 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTA 13090649 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || ||||| || || || ||||| Sbjct 13090650 TAACATTCAGAAGGAGTCCACTCTGCACTTGGTGCT 13090685 >seq119 Length=24197627 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || ||||||| | ||||| ||| | || Sbjct 4458893 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCTTCA 4458834 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| || || ||||| || || || Sbjct 4458833 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAG 4458774 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||||||||| |||| |||| |||||| | |||||||| Sbjct 4458773 CAGCGTCTGATCTTCGCCGGCAAACAGCTAGAGGATGGACGCACTCTTTCTGATTACAAC 4458714 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || || || | || || ||||| | || | ||||||| Sbjct 4458713 ATCCAGAAGGAGTCAACTTTGCACTTGGTGCTCCGTCTCCGCGGAGGAA 4458665 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || ||||||| | ||||| ||| | || Sbjct 4459349 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCTTCA 4459290 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| || || ||||| || || || Sbjct 4459289 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAG 4459230 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| ||| | ||||| | ||||| || ||||||||| Sbjct 4459229 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAAC 4459170 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 4459169 ATCCAGAAGGAGTCGACCCTTCACTTGGTTCT 4459138 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || ||||||| | ||||| ||| | || Sbjct 4461064 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCTTCA 4461005 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| || || ||||| || || || Sbjct 4461004 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAG 4460945 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| ||| | ||||| | ||||| || ||||||||| Sbjct 4460944 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAAC 4460885 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 4460884 ATCCAGAAGGAGTCGACCCTTCACTTGGTTCT 4460853 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || ||||||| | ||||| ||| | || Sbjct 4459121 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCATCA 4459062 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| || || ||||| || || || Sbjct 4459061 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAG 4459002 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||||||||| | || |||| |||||| | || ||||| Sbjct 4459001 CAGCGTCTGATCTTCGCCGGCAAACAGCTCGAGGATGGACGCACTCTTTCTGACTACAAC 4458942 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 4458941 ATCCAGAAGGAGTCGACCCTTCACTTGGTTCT 4458910 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || ||||||| | ||||| ||| | || Sbjct 4460240 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCATCA 4460181 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| || || ||||| || || || Sbjct 4460180 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAG 4460121 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| ||| | || |||| |||||| | || ||||| Sbjct 4460120 CAGCGTCTGATCTTCGCCGGCAAGCAACTCGAGGATGGACGCACTCTTTCTGACTACAAC 4460061 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 4460060 ATCCAGAAGGAGTCAACCCTTCACTTGGTTCT 4460029 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || ||||||| | ||||| ||| | || Sbjct 4461292 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCTTCA 4461233 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| || || ||||| || || || Sbjct 4461232 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAG 4461173 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || |||| |||||| | || ||||| Sbjct 4461172 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGACGCACTCTTTCTGACTACAAC 4461113 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 4461112 ATCCAGAAGGAGTCGACCCTTCACTTGGTTCT 4461081 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || ||||||| | ||||| ||| | || Sbjct 4461615 ATGCAGATCTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTGGAAGTTGAGCCTTCA 4461556 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| || || ||||| || || || Sbjct 4461555 GACACCATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAG 4461496 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || |||| |||||| | || ||||| Sbjct 4461495 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGACGCACTCTTTCTGACTACAAC 4461436 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 4461435 ATCCAGAAGGAGTCGACCCTTCACTTGGTTCT 4461404 >seq67 Length=2158 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || || || |||| Sbjct 941 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 1000 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || |||||||| |||| |||| || | ||| ||||||||||| ||||| || || Sbjct 1001 GATACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGA 1056 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | || || || ||||| || | ||||||| ||||| | || || Sbjct 1057 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTA 1116 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || ||||| || || || ||||| Sbjct 1117 TAACATTCAGAAGGAGTCCACTCTGCACTTGGTGCT 1152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433285100934245